Detailed information on ENST00000494236

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000494236 517 233 UTR3 Trans

Sequence

>ENST00000494236 (614 nt)
GGAGTGTAGTGGCACGATCTTGGCTCACTACAGTCTCCACCTCCCAGATTTAAGCTATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGTG<br />TGCCACCATGCCCAGCTAATTTTTGTATTTTGAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTTGTCTTGAGCTCCTGACCTCACGTGATGCGCCTG<br />CCTCGGCCTCCCAAAGTGTTGGGATTACAGGCTTGACCCACCGCACCCAGCCAGAATATACCTCATTCTTAATGAAATAAGCCACCTAAACTTTCTGCAT<br />TCTTTTAGTGAATTTCACAAAACTATTTATATTATTATTACGTATTAATGGAAAGTTTAAATTTTGCTTAACTAGAGTTTTCTGGATTAAAAGTATTGCT<br />GACATTCTTATTTCTTTTCTAATAGAAGTAAAATAAGTGAACTTACAACTGAAGTTAATAAACTTCAGAAGGGAATAGAAATGTACAATCAAGAGAATTC<br />AGTATATTTGTCATATGAAAAGAGGGCTGAGACTTTAGCTGTTGAGATAAAAGAGCTTCAAGGACAACTAGCAGACTACAACATGTTGGTAGATAAACTT<br />AATACCAACACTGA

Expression



Full and truncated open reading frames discovered in ENST00000494236

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT130604 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q96LB3|IFT74_HUMAN (Evalue: 2.0E-31)