Detailed information on ENST00000494795

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000513143 podoplanin protein coding ENST00000494795 543 293 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000494795 627 295 UTR3 Trans

Sequence

>TCONS_00247058 (3247 nt)
TTTACTTTAATATGAAATTCTAGATGTGAAATCGCCAGATCTTTTAGGGCTTTATCGTACTTTCTGGGAAGGTTGTCTCATTTATACTCCTAGAACCGTC
TCTGACATGCAACATCCGTCAGAGGTATCTCCACATGCTATGGAACTTTAAAACATCATTTAAGTGGATGCATATTATTCCATTATTAAACATTCTCCCC
TGATTTTCTTACTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTGACTGCAACCTCTGCCTCCC
AGGTTCAAGCGATTCCCCCTGCCTCAACCTCCTGAATAGCTGGGATTACAGGTGCCCGCCATCACGCCCAGCTAATTTTTGTATTTTTTAATAGAGATGG
GGTTTCGCCGTGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCTGCCCGCCTTGGCCCCCCAAAGTGCTCATATTACAGGCGTGAGTCACTG
CACCCAGGATTTCTTAAAATCTTCAGCACCTTTGTTGCTTCCATTTTTATGTCATTATAAGCAACAACTACACTCTGCATAAATTTTTGTCGAAAGTATA
GATTATTTCTTTTCACTCGTATTTAGAGTGCTTCATTACAGTGTAATTTTTAAGAAAAGTAACTTAAGTTTTTGATGGTTTTATTTCATCTGTTTATTAT
AAGCAAGTGTGATATGCCGAGTCTATGAGAGCTGAGCCTTTACCTACCTGAGAAGTAAGGCATGCTGGTGTTCCACTCACCACCTCCGTGCGGTTGGCCA
GACTCTGTGGGCAAGAATGTAAATTGCTATAATTTTTTTGTGAAAGTGGTTTGATGTATCAAGAGCCTTAAAATGTGTATGTTCAAGAATTGTTAATAAT
ACTATTAATGATAGCCCCAAGCTGGAAACTGGAAACCGAAATGCCCATCAACAGTAGGAAATGGTCAGATAATTATGGTATCTTCTACTGTAATGAGGAA
GAACAAGTTACAGCCACTGGCTGAATGATGGCATGAGTAAATCTCAGAAACATGTCGGGAGGAAAAGCTAGACCCAGAGGAATGCCTCCTGGAAGATCCC
ATTTATAAAGCTTGGAAGCAGGTGAAGTGGCCTGTGCTGTGAGAGGGTGGGGCAGTGGCTGCATGTGGTATGGGCACCAGGTGGTGGTTAGAAGGGAAGG
CAAGGTCTGATGTGGGGTGTGCTTGGTTTCTTGGTCCTGGTGCTCTCTGGGCAGATGTGTTTCAGATATAGAAATTCATTGAGCTGTACACTTAGGATGT
GTATACTTTCCTATGGGTATGCACAATAAAAGCTTAAAAAAATACATGTTTGTGCCAGGAAACTCATCATAGGTTAATGTCCATGATAAAGGACTTAGAA
ACCAGTATGACAATAGAAGAGAAATAGATCATTAAATATTGGTCCACCTATGTTGTTTTTCAGGCATAAAAACCCCATTTTCAAGGAAGATAAAGCGTTA
GGAGAAAGTGTTTACAATATATTAAAACTGAAAAAAAGTAGGACTGGAAACTGTGTATATATATATATATACACACACAGAGAGAGAGAGAGCAAGCAAG
CACCACATTTTATTGGCTTGCTTATTTGGTTTTACATTTACATTATAATCCACTGGAAGAAAGGACATCAGGATGTTAGCTGTTTATTTCTGAATGGTAG
AAATTAAAATATTTTCATTTTTTTCTCTTTATGTTGATCAGATGTTCTACAATGAGTATATTTAACTTTTATGTTCAGAATAAAATCAGTTATTTAAGAA
GAGAGAGGAGGAGTGGTTTCTGGGAAACAAAAAACAAGGTTGTTCTCCTGCAATTTGTTCATTCTCTGTTCCCATCAGAGCTCTCGTGTTGAAAGGGATT
AAGGAGATGTTGGTGTCTTTTTTTTCCTTCCTCTGGATTGTGAGGAACTGAAGTCTTTAAATGAATCAGCAGTTCATTCCTTGAAGTTAGTCTTGAAGAC
ATCAGTATTTTCCCATTTCATGGTCTGTCATTTTGTATTAGAGGAGAGTAAGACACTGTATAAATGGTATTTTGCAACAAAGTATAAACCTTTGGGTTGT
ATGTTTTCTGTTGCTTTATAGTTTAAAATGGAATGGACAGGAACGTTTTTAGAAATATGCAAATACATGCTCTCAGTGGATAGGCTTACACTTTGGCAAA
AGTAACCTAAATCCAAGCGGTCATGAACCGTTGAGAATTGTCTCTTCTCTGGAGACACTGAGCTGGAACCTGGTCTCGCTGTGCAGTGGGTGGCAGGCAG
CCTCTGCCTTTTGATTAATCATGTGCAGCTGTCTCCACACACTGCAGAGACGCTTTCTGCATTTTGTCTCTATTGCGCTCTCGAAAATTTGGCAAAATAA
TGCATTTCATTTGCAGGTGGAAGTGAGTTGGTCATCTACATTTGTGGATAAAGTTATTGTCATGAGACTCATTTCTTCAAAGCATTTCACAGATACGATG
AATGACAGAGTGCATTCCTTCCTCAACGACATTGGCTTTGTTTGCCTCCTCAGTTAAATCAAGGTGTGAAACAAACCAGGAGAAAAAGAAAGATTATTTA
AAATGAGGCCATCAGTATCAGGAATGAGAAGAACAGCTGCTTGCAAACTCCAGCACTGTGTGGCGTTGTTTACAGGACAGAAATCTTGCTTCTGTAAGTT
GTGGAAAGTTAACGTGATGTTAACCTTGTCGGACCTTGTTTTTGTTCTGCACCCCTCCTTTGCTTAGGAGACTACCTAGGTGGAGAAGCGTACTGGGCCG
GCGGCCTGCACCTCTACACCCCATTACCTTTCCGGCCAGGCCAGGGTGGCTTTGGAGAACTTTTCCGAACACACTTCTTTCTCAACGCAGGAAACCTCTG
CAACCTCAACTATGGGGAGGGCCCCAAAGCTCATATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCGTACGGGGCCGGGATTGTCCTCAGGCTTGGCAAC
ATCGCTCGGTTGGAACTTAATTACTGCGTCCCCATGGGAGTACAGACAGGCGACAGGATATGTGATGGCGTCCAGTTTGGAGCTGGGATAAGGTTCCTGT
AGCCGACACCCCTACAGGAGAAGCTCTGGGACTGGGGCAGCAGCAAGGCGCCCATGCCACACACCGTCTCTCGAGGAAACGCGGTTCAGCGATTCTTTGA
CTGCGGACCCTGTGGGAAACCCCGTCAATAAATGTTAAAGACACACTC

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.