| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000478730 | ORAI calcium release-activated calcium modulator 2 | protein coding | ENST00000495237 | 603 | 288 | UTR3 | Trans | |
| ENST00000498813 | delta(4)-desaturase, sphingolipid 1 | processed transcript | ENST00000495237 | 589 | 289 | noncoding | Trans | |
| ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000495237 | 607 | 289 | UTR3 | Trans | |
| ENST00000591226 | tropomyosin 4 | retained intron | ENST00000495237 | 600 | 288 | noncoding | Trans | |
| ENST00000620139 | melanoregulin | protein coding | ENST00000495237 | 593 | 287 | UTR3 | Trans | |
| TCONS_00009834 | SRY (sex determining region Y)-box 13 | novel protein coding | ENST00000495237 | 630 | 287 | UTR3 | Trans | |
| TCONS_00023682 | pre-mRNA processing factor 18 | novel protein coding | ENST00000495237 | 603 | 287 | UTR3 | Trans | |
| TCONS_00023685 | pre-mRNA processing factor 18 | novel protein coding | ENST00000495237 | 603 | 287 | UTR3 | Trans | |
| TCONS_00023687 | pre-mRNA processing factor 18 | novel protein coding | ENST00000495237 | 603 | 287 | UTR3 | Trans | |
| TCONS_00023689 | pre-mRNA processing factor 18 | novel protein coding | ENST00000495237 | 603 | 287 | UTR3 | Trans | |
| TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000495237 | 622 | 287 | UTR3 | Trans | |
| TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000495237 | 622 | 287 | UTR3 | Trans | |
| TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000495237 | 607 | 289 | UTR3 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000495237 | 609 | 286 | UTR3 | Trans | |
| TCONS_00101169 | myosin phosphatase Rho interacting protein | novel protein coding | ENST00000495237 | 521 | 290 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000495237 | 637 | 295 | UTR3 | Trans | |
| TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | ENST00000495237 | 604 | 287 | UTR3 | Trans | |
| TCONS_00194652 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000495237 | 606 | 287 | UTR5 | Trans | |
| TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000495237 | 606 | 287 | UTR5 | Trans | |
| TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000495237 | 611 | 287 | UTR5 | Trans | |
| TCONS_00213191 | tubby like protein 4 | novel protein coding | ENST00000495237 | 614 | 286 | UTR5 | Trans | |
| TCONS_00213738 | enoyl-CoA delta isomerase 2 | novel protein coding | ENST00000495237 | 606 | 286 | UTR3 | Trans | |
| TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000495237 | 617 | 276 | UTR5 | Trans | |
| TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000495237 | 625 | 288 | UTR5 | Trans |
>TCONS_00252827 (1293 nt)
CACTATTACTCCACCACCCAGAGGTAACCACAATTAATTTTAAACTGTGTCCTTCTAGTATTTGTTCTGTTCATACTCATACATGTAATCTTCTGTTTCT
GGTTCTAGATCATGCCTCTATTTTTGTACTAACCTCTCGCAGACAATACAGGCACTGCCTGGTGCTGGTGTCCATGGGCTTCTCAGTAACAAGATAGCTA
GTATTGCTTCTGTTGAAAGCAGGGAATCTGTCAGCCTCTCAGATTACTAACTACACTCTTTCACCCCTCCCTCTTTCTTACCTTTTTTTTTTCTTTTTTA
GACGGAGTCTGGCTCTGTTGCCCAGTCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTGCTGCCCCAGC
CTCCTGAGTAGCTGGGACTACAGGCGCCTGCCATCACGCCCAGCTAATATTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTT
GAACTGGTGACCTCGAGTGATCCACCCACATCGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACACCTCCAGTCTTTTGATCTGAACAAAGCTAT
TAGCCTTTTTCACCTGAAAACCACAGTTGTTGCCAGCTAATCTGAAAAGGCAGGAGGTCCGGGATTGTTGTCATCTACCTGGAGCGATGAGGGTGCAGGG
GAAAGCAGAGAAAATAGTGACTGTGGGAAGAGAACCAAGTTGACCTAGAAAACGCTAAAACTTTAAGGATTATCTAACCCCCAGTAGCACCGAGACACTG
TGGTTCAATTCTCATAAAGTTCAAATAACAGAACAGCCGTGCCGGGCTATCACTGAAATGGTCAAACCTCCTGTCTTGTGACCTTTCCTTCTCTTCAGGG
TTCCCCACTGAAGGACTTGGTCCAGCTGTCTGGCAGGGAGGAGAGACAGAAGCTCTGGCCCGCCTGGATAAGCACTTGGAACGGAAGGCCTGGGTTGCCA
ACTATGAGAGACCCCGAATGAACGCCAACTCCCTCCTGGCCAGCCCCACAGGCCTCAGCCCCTACCTGCGCTTTGGTTGTCTCTCCTGCCGCCTCTTCTA
CTACCGCCTGTGGGACCTGTATAAAAAGGTGAAGCGGAACAGCACACCTCCCCTCTCCCTATTTGGGCAACTCCTATGGCGAGAGTTCTTCTACACGGCA
GCTACCAACAACCCCAGGTTTGACCGCATGGAGGGGAACCCCATCTGCATCCAGATCCCCTGGGACCGCAATCCTGAGGCCCTGGCCAAGTGGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.