Detailed information on ENST00000495554

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000495554 595 263 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000495554 534 255 UTR5 Trans
ENST00000418314 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein coding ENST00000495554 522 244 CDS Trans
ENST00000450928 antisense antisense ENST00000495554 502 276 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000495554 564 265 CDS_UTR Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000495554 558 255 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000495554 615 264 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000495554 615 264 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000495554 616 261 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000495554 628 266 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000495554 628 266 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000495554 628 266 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000495554 595 263 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000495554 623 262 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000495554 605 261 UTR5 Trans

Sequence

>TCONS_00249092 (2552 nt)
ATTTTGTTTTGGACACCGAGCAGGAGCTGGCGGCCGCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGACGGATCGGCCGACTAGACAGCCA
ACCAGCAACAACGAACTGAGCTCGCATACTACCGCTTACGCATCTAACCAACCGCCCATCTAGCTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGC
CGGTCCCCGGCCCGCCTGCCGGAGCCGTGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTGTTTCCTTCGATTCTCGGGATTCGAAGATGGCTGCACAGTC
AGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGGTGAGGCAGCCAACAGCAACTTCAACTCCTTCCTAAGAAAACATTACTT
AACTTGGCCCTGGGGTCCAATGCACAAAGCCAATTTTAAGCTAAATACCAACAGAAGGCTACAGACCTCTGTTCTTAGTTGCATCTCATGTGGTACACAA
AACAAATTGGGCGGTTGTTTCAAAACCCCTTATCAGTAGACTTTTATGTTAAGCTGTCTGAAGTATTTATTTGGTGGGATGTATTTTAAAAGACTCCTAA
CACTCTTCCTTTTCACATTTTTTTACGTTGATACTGGGGTCGTGCAGCACGGTAGCATGGTACCCTGGCTACAGTAGGCTTGCTGCCCAGTCCAAGGCCA
GCAGTGTTGTGTCTGGCCTGTAAGAGGCAGGTAGCAAGCCATGAATATGTCCAAAGGCCCTTGAATGTCATTCTTGGGCCTTGTAAGAGGCACTCGCTTT
GCTCCATTTCACTTTCTTTCCATTCTGCTTTTAGTTTGGTTTTGTTTTGGATTCTTCTACAGTTAAGTGTTCTTCTCTTCCATTCCATTATACTTCCTTG
ACAGAAATAATGAGTCTCTTCACAGGCTCATAAATGATCAAACTGATGTAACTTTGAAAAGTAACTACTTGGAGTCAGAAAAAGTGATGATTGGAGACTA
AGAAAAGTAAAGATATTCAAAGGCAGTTTCTATCTCTGACAACTTTGTTCATTAAGAGTGCCTTTGTTTAGGCGCGGTGGCTCATGCCTGTAATCCCAGC
ACTTTGGCAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGTTTGAGATCAGCCTGCCCAACATGGTGAAACCCTGTCTCTACTAAAAATAGAAAAATTAG
CTGGGCGTGGTGGCGTGTGCCTATAATCCCAGCTACTCAGGAGGCTGAGGTAGGAGAATCACTTGAACCCGTGAGGCGAAGGTTGCAGTGAGCCAAGATC
CTGCCACTGCACTCCAGCCAGGGCAACAGAGGACAGAGTGAGGCTCCGTTTCAAAAAAAAGAATGCCTTTGATCAGTGATTTCATTAAGTTGACTTTCGA
CCACTGAAATTTACTTAATGTCTATTTTTGCCTCTTCTGAGGCATATGTGCTTCTCTCCTTATCTCTTTGGCTATGATAAGCTAATTATTTATGTTTGCA
TAATATTTATGTTTGCATGTTAGTGACATATATTTTAAAATGTGATACACTCCTGTAATTTATGAGAGTATGTTCATTGCTGTGAGCTTTGAAGGTGCTC
TAATCCTTCCTCATATTTGGCCTTAGAATGCACCTCGGATCCCCCAAGGTTTAGGCTTTCTTCATTTGTCTTTGAAACTATATCTTCTGTCTCTTGTCAT
ATCTGCTTATTGCGTGTTTTTCATACCTTCCACCTCTCTAAAAGCCGTTACCTGAGCCCTCGTTATCACTTTTGGTTGAATGTGCTGCACTTAGCTGCAT
TTCTAAGTTTCTGATTCTTGCAAGTTTGTGGAAACAGAGGAGTCTTTAACCCACATCAGCCTTGATCTAAGTGTACCACTTTACTTAAAAGTTCGTGGGA
TCTGGAGCTCCTGGTCTAGCAAGCCATGAAAATGCCAATAAATGTTTGTAATAAAGCTTTTATTTAAACATCCATTTTGTTCGACCTTGAAGCTTTACTA
ATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTCGGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCA
GATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGGTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGAGGCC
GTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAGGACACCTGGA
TGCTGAGTTGGATGCCTACATGGCGCAGACAGATCCCGAAACCAATGATTGAAGCCTGCCCATCCTCCCATGAGAGACTCTTGTTAGTCAACACATCTGT
AAATAACCTTGAGATAACAGATGAGAAGAAATCTGATTGATGCTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCCACCAGCTTGTGCATTTAG
TGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTGTCCTTTG

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.