Detailed information on ENST00000495554

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000495554 595 263 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000495554 534 255 UTR5 Trans
ENST00000418314 mannosyl (beta-1,4-)-glycoprotein beta-1... protein coding ENST00000495554 522 244 CDS Trans
ENST00000450928 antisense antisense ENST00000495554 502 276 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay ENST00000495554 564 265 CDS_UTR Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000495554 558 255 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000495554 615 264 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000495554 615 264 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (solub... novel protein coding ENST00000495554 616 261 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000495554 628 266 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarit... novel protein coding ENST00000495554 628 266 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarit... novel protein coding ENST00000495554 628 266 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000495554 595 263 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000495554 623 262 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000495554 605 261 UTR5 Trans

Sequence

>ENST00000495554 (2553 nt)
ATTTTGTTTTGGACACCGAGCAGGAGCTGGCGGCCGCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGACGGATCGGCCGACTAGACAGCCA<br />ACCAGCAACAACGAACTGAGCTCGCATACTACCGCTTACGCATCTAACCAACCGCCCATCTAGCTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGC<br />CGGTCCCCGGCCCGCCTGCCGGAGCCGTGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTGTTTCCTTCGATTCTCGGGATTCGAAGATGGCTGCACAGTC<br />AGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGGTGAGGCAGCCAACAGCAACTTCAACTCCTTCCTAAGAAAACATTACTT<br />AACTTGGCCCTGGGGTCCAATGCACAAAGCCAATTTTAAGCTAAATACCAACAGAAGGCTACAGACCTCTGTTCTTAGTTGCATCTCATGTGGTACACAA<br />AACAAATTGGGCGGTTGTTTCAAAACCCCTTATCAGTAGACTTTTATGTTAAGCTGTCTGAAGTATTTATTTGGTGGGATGTATTTTAAAAGACTCCTAA<br />CACTCTTCCTTTTCACATTTTTTTACGTTGATACTGGGGTCGTGCAGCACGGTAGCATGGTACCCTGGCTACAGTAGGCTTGCTGCCCAGTCCAAGGCCA<br />GCAGTGTTGTGTCTGGCCTGTAAGAGGCAGGTAGCAAGCCATGAATATGTCCAAAGGCCCTTGAATGTCATTCTTGGGCCTTGTAAGAGGCACTCGCTTT<br />GCTCCATTTCACTTTCTTTCCATTCTGCTTTTAGTTTGGTTTTGTTTTGGATTCTTCTACAGTTAAGTGTTCTTCTCTTCCATTCCATTATACTTCCTTG<br />ACAGAAATAATGAGTCTCTTCACAGGCTCATAAATGATCAAACTGATGTAACTTTGAAAAGTAACTACTTGGAGTCAGAAAAAGTGATGATTGGAGACTA<br />AGAAAAGTAAAGATATTCAAAGGCAGTTTCTATCTCTGACAACTTTGTTCATTAAGAGTGCCTTTGTTTAGGCGCGGTGGCTCATGCCTGTAATCCCAGC<br />ACTTTGGCAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGTTTGAGATCAGCCTGCCCAACATGGTGAAACCCTGTCTCTACTAAAAATAGAAAAATTAG<br />CTGGGCGTGGTGGCGTGTGCCTATAATCCCAGCTACTCAGGAGGCTGAGGTAGGAGAATCACTTGAACCCGTGAGGCGAAGGTTGCAGTGAGCCAAGATC<br />CTGCCACTGCACTCCAGCCAGGGCAACAGAGGACAGAGTGAGGCTCCGTTTCAAAAAAAAGAATGCCTTTGATCAGTGATTTCATTAAGTTGACTTTCGA<br />CCACTGAAATTTACTTAATGTCTATTTTTGCCTCTTCTGAGGCATATGTGCTTCTCTCCTTATCTCTTTGGCTATGATAAGCTAATTATTTATGTTTGCA<br />TAATATTTATGTTTGCATGTTAGTGACATATATTTTAAAATGTGATACACTCCTGTAATTTATGAGAGTATGTTCATTGCTGTGAGCTTTGAAGGTGCTC<br />TAATCCTTCCTCATATTTGGCCTTAGAATGCACCTCGGATCCCCCAAGGTTTAGGCTTTCTTCATTTGTCTTTGAAACTATATCTTCTGTCTCTTGTCAT<br />ATCTGCTTATTGCGTGTTTTTCATACCTTCCACCTCTCTAAAAGCCGTTACCTGAGCCCTCGTTATCACTTTTGGTTGAATGTGCTGCACTTAGCTGCAT<br />TTCTAAGTTTCTGATTCTTGCAAGTTTGTGGAAACAGAGGAGTCTTTAACCCACATCAGCCTTGATCTAAGTGTACCACTTTACTTAAAAGTTCGTGGGA<br />TCTGGAGCTCCTGGTCTAGCAAGCCATGAAAATGCCAATAAATGTTTGTAATAAAGCTTTTATTTAAACATCCATTTTGTTCGACCTTGAAGCTTTACTA<br />ATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTCGGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCA<br />GATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGGTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGAGGCC<br />GTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAGGACACCTGGA<br />TGCTGAGTTGGATGCCTACATGGCGCAGACAGATCCCGAAACCAATGATTGAAGCCTGCCCATCCTCCCATGAGAGACTCTTGTTAGTCAACACATCTGT<br />AAATAACCTTGAGATAACAGATGAGAAGAAATCTGATTGATGCTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCCACCAGCTTGTGCATTTAG<br />TGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTGTCCTTTG

Expression



Full and truncated open reading frames discovered in ENST00000495554

In silico ORF/peptide predictions
>peptide 1 (65 aa)
MIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND

>peptide 2 (64 aa)
MSGEAANSNFNSFLRKHYLTWPWGPMHKANFKLNTNRRLQTSVLSCISCGTQNKLGGCFKTPYQ

>peptide 3 (57 aa)
MHICRKQKDTWMLSWMPTWRRQIPKPMIEACPSSHERLLLVNTSVNNLEITDEKKSD

>peptide 4 (53 aa)
FCFGHRAGAGGRCRRKAGKGRPGEQTDRPTRQPTSNNELSSHTTAYASNQPPI

>peptide 5 (51 aa)
MLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQVGV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT006533 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 2.0E-25)