Detailed information on ENST00000495934

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000495934 604 293 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000495934 617 298 UTR3 Trans
ENST00000368324 synaptotagmin XI protein coding ENST00000495934 600 290 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000495934 511 302 UTR3 Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000495934 652 282 noncoding Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000495934 639 305 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000495934 648 284 UTR3 Trans
ENST00000587344 sense_intronic sense intronic ENST00000495934 618 296 noncoding Trans
TCONS_00006772 lincRNA novel protein coding ENST00000495934 607 307 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000495934 526 303 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000495934 608 284 UTR3 Trans
TCONS_00032153 long intergenic non-protein coding RNA 959 novel noncoding ENST00000495934 618 287 noncoding Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000495934 639 305 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000495934 603 265 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000495934 626 287 UTR5 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000495934 601 298 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000495934 617 298 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000495934 617 298 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000495934 617 298 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000495934 641 284 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000495934 648 284 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000495934 624 287 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000495934 624 287 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000495934 641 284 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000495934 620 279 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000495934 698 304 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000495934 630 302 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000495934 629 281 UTR5 Trans
TCONS_00142538 antisense novel protein coding ENST00000495934 607 324 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000495934 628 280 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000495934 628 280 UTR3 Trans
TCONS_00198052 NSA2 ribosome biogenesis homolog (S. cerevisiae) novel protein coding ENST00000495934 565 279 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000495934 604 293 UTR3 Trans

Sequence

>TCONS_00249683 (471 nt)
GATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGATATGAAGAAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGG
GGACATCGTTTTCTGCAGAAACCAACCGAAGGGATGAGGATGCAGACATGTCTTTTCAGGCCGGGCACGGTAGCTCTCACCTGTAGTCCCAGCACTTTGG
GAGGCCGAGGCAGGTGGATCATCTGAGGTGGGGAGTTCGAGACCAGACTGACCAACATGGAGAAACCCCGTCCCTACTGAAAATACAAAATTAGCTGGGT
GTGGTAGTGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGCTTGCGGCGAGCCAAGATCTCGCCA
TTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCCAAAATATAAAAAATAAAAACTTGTTTTCAAA

Expression



Full and truncated open reading frames discovered in TCONS_00249683

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.