Detailed information on ENST00000495995

lncRNA-RNA interactions

Number of interactions: 24

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336824 fibronectin type III domain containing 3... protein coding ENST00000495995 514 374 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000495995 555 303 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000495995 512 306 CDS Trans
ENST00000450928 antisense antisense ENST00000495995 552 289 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000495995 530 299 CDS Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000495995 557 302 CDS_UTR Trans
ENST00000572705 transient receptor potential cation chan... protein coding ENST00000495995 931 584 UTR3 Trans
ENST00000597488 RPARP antisense RNA 1 retained intron ENST00000495995 761 612 noncoding Trans
TCONS_00025805 zinc finger, MIZ-type containing 1 novel protein coding ENST00000495995 646 358 UTR3 Trans
TCONS_00026285 cytochrome P450, family 26, subfamily A,... novel protein coding ENST00000495995 770 599 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000495995 713 592 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000495995 713 592 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (... novel protein coding ENST00000495995 960 594 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (... novel protein coding ENST00000495995 960 594 UTR5 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000495995 931 584 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000495995 1004 597 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000495995 938 591 UTR5 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000495995 574 299 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000495995 574 299 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000495995 574 299 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000495995 659 460 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000495995 512 306 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000495995 775 597 CDS_UTR Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000495995 999 593 UTR5 Trans

Sequence

>ENST00000495995 (2040 nt)
AAAGCCCCACCCCGGTGCGCGGGTATGGCGGCCAGCCTGTGGATGGGCGACGTGAGTGAGGGCAGCCGTCCGGGGTCTGAAGACAAGGAAGCATCTCGGT<br />TTCGCGAGAGAGGAAGGATCTGAGTGGGAGGGGACTTGGGATCCCAGAAAGGGGAGACGTGTGACGGGGGTTCTTTTTGGTGACACAGAAGCGGGTTCCA<br />GCATCTAAGTGAAGAGGCTGAGTCCGTGAGGCTAGGGGTCCTGGGGCCCCACCTGGGTTCGTGGGAGGGAAAGGTGGTGCTTTGGGGACATAGAATGGGA<br />GCAATCCAAGGACTGAGGCGCGCTGTTCTGGGACCGGAGGAGTGGGGTTTCTAGGTCCAAGGGGAGGCTCCCTAAAGCGGGGCAAGCTTGAACCAAAAGA<br />GCTGGGGTTTCAGGCCGCTCAGTGGAGGCGAACCTCGCCCCTCGCTCCCCCAGCGGCGCGTAGCCAGCCCTGGGCTGAACGGGAGGGGCTCTGGAACCCG<br />GAGTGGGAAGCCCGGCCGCCGGCCTGAGCCGCTGTGCTCTTGTTTTTACGCAGCTGGAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCAC<br />CATGGGGGAGACCGTAATGAGCGTCAAAATTATCCGAAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCT<br />GAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTTTACTTAGCTTACAGCTGCACCAGCTGGCACACCTGGGCTCATAGAACC<br />ATGGAGCTGGCAGTGCCCTTAGCGGTCATCCGTGCAACCCCCTCATTTTATACAGGAGAAAAAGCTGAGGCTTAGAGAGGGGGAGATGTTTTGGCCAAGG<br />CGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGA<br />TGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGTAAGGCCTTACTTGT<br />TACTGATGCTTAACTGTGTTAGTTTCAGCCTTTCTCTCCTGAGTGGAGGTGTTTTAGAAAGGCCCTGCAGCATGGCGATTAAGACCACAAGCTCTGGAGC<br />CAAACTGCCTGGTTCAAATCCCAGCTCCAATACAGGTGAGGGAGAATGCCAGTATTGTAGAATTGAAGCTCTGTGACCCTTACAGCCCCATCTGTAAAAT<br />GGAGCTGATTAATAATAGCTGCTTGTAGGGTTGATGTAAGGATTAAAGGATATAATATAAGTAAGTCACATTTGAAATGCTTTATAGGTGTTTGCTGTTT<br />TGCTTGTTATTGTTACTGAGCCTTTCAGTGTAGTTAGAAGTGTTCCACTTCAGGCTGGGCGTGGTGGCTCATGCCTGTAATCCTAACACTTTGAGAGGCC<br />CAGGTGGGTGGATTGCGTGAGCTTAGGAGTTGGAGACCAGCCCGGGCAACACGGTGAAATGCCGTCTCTATTAAAATACAAAAAATTAGCCGGATGTGGT<br />GGTGTGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGATAATTGCTTTAACCTGGAAGGCGGAGGTTGCAATGAGCCAAGATTGTGCCACTGCA<br />CTCCAGCCTGGGCAACAGAGCCAGACTCTGTCTCCATAAAAAAAAAAAAAAAGTTGGCCCGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAA<br />GCTGAGGTGGATGGATCACCTGAGGTCAGGACTTTGAAACCAGCCTGGCTAACATGGCAAAACCCCATCTCTACTAAAAAAATACAAAAGTTAGCCGGGC<br />ATGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACACAACTG<br />TGCTCCAGCCTGGGTAACAGAGCAAGATTCTGTCTCAAAT

Expression



Full and truncated open reading frames discovered in ENST00000495995

In silico ORF/peptide predictions
>peptide 1 (76 aa)
MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPLLSLQLHQLAHLGS

>peptide 2 (56 aa)
MLNCVSFSLSLLSGGVLERPCSMAIKTTSSGAKLPGSNPSSNTGEGECQYCRIEAL

>peptide 3 (50 aa)
MGNPFQEPHLYLAYSCTSWHTWAHRTMELAVPLAVIRATPSFYTGEKAEA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT001966 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9QZI7|TSAP1_RAT (Evalue: 9.0E-35)