Detailed information on ENST00000496650

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000382142 myotubularin related protein 12 protein coding ENST00000496650 610 277 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000496650 610 277 UTR3 Trans

Sequence

>ENST00000496650 (475 nt)
TAGAAGTGGAGGGGCCGTTCGAAGAGTCGTGAGGGGGTGACGGGTTAAGATTCGGAGAGAGAGGTGCTAGTGGCTGGACTTGACCTGGAAAGGATCTTGC<br />TTTGTTGCCCAGGCTGGAGTGCAGGAGCACAATCTCAGCTCACTGCAACCTCTGTCTCCCAGGCTCAAGCAATCTTCCCATCTCAGCCTTTCGAGTAGCC<br />GGGACTACAGGCATGCACCACCACGCCCAGCTAATTTTTTGTATTTTTGATAGAGTCGGGGCTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGC<br />TTAAGCAGTCTGCCCACCTTGGCCTCTTAGAGTGCTGGGATTACAGGCATGAGCCACCATGTCCAGCCTCATTTGCATTCTTGTACTGCATTTTCATTAA<br />ATCATTCAAGTTCCTTTTATCTTGTGTAACATATTTAATTGCATTTTCCTACTGAATAAAAAAAAGGGAACAGTT

Expression



Full and truncated open reading frames discovered in ENST00000496650

In silico ORF/peptide predictions
>peptide 1 (80 aa)
MHHHAQLIFCIFDRVGALPCCPGWSQTPELKQSAHLGLLECWDYRHEPPCPASFAFLYCIFIKSFKFLLSCVTYLIAFSY


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT134329 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q96MD7|CI085_HUMAN (Evalue: 9.0E-14)