| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000439138 | transmembrane protein 98 | protein coding | ENST00000498242 | 516 | 275 | UTR5 | Trans | |
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000498242 | 527 | 288 | noncoding | Trans | |
| ENST00000498813 | delta(4)-desaturase, sphingolipid 1 | processed transcript | ENST00000498242 | 514 | 273 | noncoding | Trans | |
| ENST00000512404 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000498242 | 502 | 275 | noncoding | Trans | |
| ENST00000513143 | podoplanin | protein coding | ENST00000498242 | 513 | 274 | UTR5 | Trans | |
| TCONS_00051891 | RNA binding motif, single stranded interacting protein 2 | novel protein coding | ENST00000498242 | 560 | 307 | UTR3 | Trans | |
| TCONS_00075844 | forkhead box N3 | novel protein coding | ENST00000498242 | 522 | 270 | UTR3 | Trans | |
| TCONS_00075845 | forkhead box N3 | novel protein coding | ENST00000498242 | 522 | 270 | UTR3 | Trans | |
| TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000498242 | 548 | 271 | UTR3 | Trans | |
| TCONS_00148704 | WD repeat containing planar cell polarity effector | novel protein coding | ENST00000498242 | 507 | 306 | UTR3 | Trans | |
| TCONS_00148705 | WD repeat containing planar cell polarity effector | novel protein coding | ENST00000498242 | 507 | 306 | UTR3 | Trans | |
| TCONS_00240685 | metastasis suppressor 1 | novel protein coding | ENST00000498242 | 507 | 233 | UTR3 | Trans | |
| TCONS_00246554 | endoplasmic reticulum metallopeptidase 1 | novel protein coding | ENST00000498242 | 540 | 314 | UTR3 | Trans |
>TCONS_00246554 (1109 nt)
TCCCTGAGGCAGTGGCGACAGCGGCGGCGAGAGGATGAACAACAAGTTCGACGCTTTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAAGAAAAC
AGCACACAGAAAGATGGTGAGAAGGAAAAAACGGAACGAGACAAGAATCAGAGCAGTAGCAAGAGAAAGGCTGTTGTCCCTGGACCGGCAGAGCATCCCC
TGCAGTACAACTACACTTTTTGGTACTCCAGGAGAACCCCCGGCCGTCCCACGAGCTCACAGAGCTATGAACAGAATATCAAACAGATTGGCACCTTTGC
CTCTGTGAGTTCTTGGTGAATTAATGGAGTGTGCCTTGATAGTTCGTTCATGCCTGTATTGATATGATGTTTATTTACTTTCCTAGTAACCTATTTAAGA
TTCTGGTTTTCTTAATTGACTGACCTGAGTCTCCGGAGTCAGATTTGTTCATTCTTAGGTTTCTCACTAGATATCCATGGTTAGCATGTAGGTATCAACA
AATATGAGAATTGTAGAGTTGATCAGAAGGGCATAATACAAAAGAACAGATTTGGGTTTTTTTATTTTTATTTTTATTTTTTAATTGAGACAGAGTCTCT
TGCTCTGTCTCCCAGGCTGGAATGCAGTGGTATCATCTCAGCTCATTGCAACCTCCGCTTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTA
GCTGAGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAAACGGGGTTCCACCATGTTGGCCAGGCTGGTCTGGAACTCCTGA
CCTTAGGTAATCCACCCGCCTTGGCCTCCCAAAAGGCTGGATTACAGGAGTGAGCCGCTGCACCTGGCCCTGTTTTTTTTTTTGTTTGTTTTGTTTGCTT
GTTTGTTTTTTTTTTTAAGTATATATTTATGGAGTCCTTACTAAGTTCAAAGTGTCATGGATACAGAAGTTTATAATACATGGTGTCTATCTTCATGAAG
TTTGACAGTAAAGTGAAAAATTTTGAAAGTTTTGTATTTAAGAACCTCCCATTAGGGTTTTGGCTGTATTAATGATTATGCATAAAATATCTTTTTCCTG
TGTTCAGAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.