Detailed information on ENST00000498262

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000500576 LYR motif containing 4 protein coding ENST00000498262 526 308 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000498262 543 302 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000498262 623 292 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000498262 620 303 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitte... novel protein coding ENST00000498262 538 305 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000498262 526 308 noncoding Trans

Sequence

>ENST00000498262 (2290 nt)
CTTCTGCTTCCGCGACCCCGGCGGTGCAGGGCGGGTGGAGTCGCGGAGTAGTCCTCATGGCCGCCCCGCCGGAGCCCGGTGAGCCCGAGGAGAGGAAGTC<br />CCTTAAGCTCCTAGGATTTTTAGATGTTGAAAATACTCCCTGCGCCCGGCATTCAATATTGTATGGTTCATTAGGATCTGTTGTGGCTGGCTTTGGACAT<br />TTTTTGTTCACTAAATTAGAAGATCATGTGATGTTGGAGTAGGAGGGTTTATCTTGGTGACTTTGGGATGCTGGTTTCATTGTAGGTATAATTATGCAAA<br />GCAAAGAATCCAGGAAAGAATTGCCAGAGAAGAAATTAAAAAGAAGATATTATATGAAGGTACCCACCTCGATCCTGAAAGAAAACACAACGGCAGCAGC<br />AGCAATTGAACAATCTTGAGCATAGAAGTCAATGTAAACGAAGTTAAGATCAACCACATAAAACATTTCATGTGCAATAAGCTCTCAATCAAGTAAATAA<br />AGTTTAAGTTGTAGTCATTTTTTTCCCACACTTGTGTGGAATGAAAACTTGCCAGTTTATTCTGGCCCTGTGTCTACTGCCAGGATAGCATTCTTACGTG<br />TTACATATAGTGGACTTGTCATCCTTAAAATGTGAACAGAATTTATTGGCAGTGTGGCAAAGAATTATAAAACATAGTGTTTAATGTACTTGGAGTTTCC<br />TTGTAGTAGTAAGTATAGAGTTTGATGATAAGTAAACGTCCCTTAACAAAAACCTCAACCTTATTACTATCCCATTAAAAAACAGCAAATACTTACTGAG<br />TTCTTGTAAGAGCTAATGTCATTGTAAGATTTAAAACTAAGGGCTTTTATCACTTTGCAAATTATTTTTTAAATGCATTCATCATTTGACAGTGTTCTCT<br />CATTTCTTAAAATGCGAGTCATCTTCCAAAAGAGTTGTTTTTAACTGCCCTAAACATTTTTGGGGAAGTATGCAGGGTTTAAATTTTTAAGTATAATTAG<br />TTCTGAATTAAAATATGCACATGGAACTTGTCTGGCAGACTGATGCAATAGTAAAACAACTGCAGAATTACTATTAATGTAAACAATCCATTTGAAAGTC<br />AATCAGCTGCTCCCATTAAAATATTATTTAAAATACAATACCCACAGCATCTAACTAAATCCTCAGGATTTATTCTCCGGGAGAAATTATCCCTTTCTAG<br />GAAAATGAAGTTATTTCTGGTTTTAATTCATACAATACTTTAAGAAAATCTGTTAAATATAACAAAACACAAGCTAGATGCTTAAGAAATGCTTAAAGAA<br />ATATTGGGGCGAAGGTAACAGCAGTCAACAGGATTGTGGCCATTACTGGTCCTATTATTTTGATGTACCATGGAAGGCACAGAAATCGAGCAAGGAAGAA<br />AATATTAGTTATTTTGATCTACATCTTTTTCTAAAGAAAAGTGGAGCTTGCCTCCAGTTCAATTCACAAGAGCATTTTCCCTCCCATGCCCACCTTTTCT<br />TGTGGCTGTCGCTAGGAAGGATGCAGAGGCTGTGTGGTTTACCAAATGCCTTAACTTAGCAGTGAATGACAACTGTCAAACACATGTTGAGGGAAAATTT<br />TTACTGATTCACAAAAAGGAAGACAGTTTGCCCACTCTTAGTGGCACAAATCAAAGCTGCATGCACTACATTATCCAAATTAGTCGTAACCAAATAGTTA<br />AAAAATTCTGCTGGGCACGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGTTGGATCACCTGAGGTTAGGAGTTTGAGACCAGCCTG<br />GCCAACAGGGTGAAACCCTGTCTCGTCTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCATGCCTGTAGTCCCAGGTACTCAGGAGGCTGAGGCAGGA<br />GAATCACTTGAACCCGAGGTGGGGCAGGCGGAGGTTGCAGTAAGCCAAGATCGCGCCATTGCACTCTAGCCTAGGTGACAGAGTGAGACTCCATCTCAAA<br />AAAAAAAAAAAATTCCATAGGATGTTCAACCATGTTTTCAGAGGCCGCACTGCATGAATGCGGGAAAATGTTGATGATCACTAATCAATAATCTGATATT<br />TAACAAAATATGGACAGGCCACTTATGCTCAGTTTTACCTTAGTTATTCCTTGGTATCCACAGGCCCAAGTCCCTTTAAATAAAATACCCTCATATTTCC<br />ATATAATCTACATACATTCTCCCATATACTTTAAATCATCTCTAGATTACTTATAATGTCTAATACAAAATAAATGCTATGTAAATGTAA

Expression



Full and truncated open reading frames discovered in ENST00000498262

In silico ORF/peptide predictions
>peptide 1 (93 aa)
MLKKCLKKYWGEGNSSQQDCGHYWSYYFDVPWKAQKSSKEENISYFDLHLFLKKSGACLQFNSQEHFPSHAHLFLWLSLGRMQRLCGLPNALT

>peptide 2 (79 aa)
SASATPAVQGGWSRGVVLMAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTKLEDHVMLE

>peptide 3 (50 aa)
MHYIIQISRNQIVKKFCWARWLIPVIPALWEAEAVGSPEVRSLRPAWPTG


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT010654 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5RI15|COX20_HUMAN (Evalue: 6.0E-37)