Detailed information on ENST00000498262

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000500576 LYR motif containing 4 protein coding ENST00000498262 526 308 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000498262 543 302 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000498262 623 292 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000498262 620 303 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding ENST00000498262 538 305 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000498262 526 308 noncoding Trans

Sequence

>TCONS_00213775 (2289 nt)
CTTCTGCTTCCGCGACCCCGGCGGTGCAGGGCGGGTGGAGTCGCGGAGTAGTCCTCATGGCCGCCCCGCCGGAGCCCGGTGAGCCCGAGGAGAGGAAGTC
CCTTAAGCTCCTAGGATTTTTAGATGTTGAAAATACTCCCTGCGCCCGGCATTCAATATTGTATGGTTCATTAGGATCTGTTGTGGCTGGCTTTGGACAT
TTTTTGTTCACTAAATTAGAAGATCATGTGATGTTGGAGTAGGAGGGTTTATCTTGGTGACTTTGGGATGCTGGTTTCATTGTAGGTATAATTATGCAAA
GCAAAGAATCCAGGAAAGAATTGCCAGAGAAGAAATTAAAAAGAAGATATTATATGAAGGTACCCACCTCGATCCTGAAAGAAAACACAACGGCAGCAGC
AGCAATTGAACAATCTTGAGCATAGAAGTCAATGTAAACGAAGTTAAGATCAACCACATAAAACATTTCATGTGCAATAAGCTCTCAATCAAGTAAATAA
AGTTTAAGTTGTAGTCATTTTTTTCCCACACTTGTGTGGAATGAAAACTTGCCAGTTTATTCTGGCCCTGTGTCTACTGCCAGGATAGCATTCTTACGTG
TTACATATAGTGGACTTGTCATCCTTAAAATGTGAACAGAATTTATTGGCAGTGTGGCAAAGAATTATAAAACATAGTGTTTAATGTACTTGGAGTTTCC
TTGTAGTAGTAAGTATAGAGTTTGATGATAAGTAAACGTCCCTTAACAAAAACCTCAACCTTATTACTATCCCATTAAAAAACAGCAAATACTTACTGAG
TTCTTGTAAGAGCTAATGTCATTGTAAGATTTAAAACTAAGGGCTTTTATCACTTTGCAAATTATTTTTTAAATGCATTCATCATTTGACAGTGTTCTCT
CATTTCTTAAAATGCGAGTCATCTTCCAAAAGAGTTGTTTTTAACTGCCCTAAACATTTTTGGGGAAGTATGCAGGGTTTAAATTTTTAAGTATAATTAG
TTCTGAATTAAAATATGCACATGGAACTTGTCTGGCAGACTGATGCAATAGTAAAACAACTGCAGAATTACTATTAATGTAAACAATCCATTTGAAAGTC
AATCAGCTGCTCCCATTAAAATATTATTTAAAATACAATACCCACAGCATCTAACTAAATCCTCAGGATTTATTCTCCGGGAGAAATTATCCCTTTCTAG
GAAAATGAAGTTATTTCTGGTTTTAATTCATACAATACTTTAAGAAAATCTGTTAAATATAACAAAACACAAGCTAGATGCTTAAGAAATGCTTAAAGAA
ATATTGGGGCGAAGGTAACAGCAGTCAACAGGATTGTGGCCATTACTGGTCCTATTATTTTGATGTACCATGGAAGGCACAGAAATCGAGCAAGGAAGAA
AATATTAGTTATTTTGATCTACATCTTTTTCTAAAGAAAAGTGGAGCTTGCCTCCAGTTCAATTCACAAGAGCATTTTCCCTCCCATGCCCACCTTTTCT
TGTGGCTGTCGCTAGGAAGGATGCAGAGGCTGTGTGGTTTACCAAATGCCTTAACTTAGCAGTGAATGACAACTGTCAAACACATGTTGAGGGAAAATTT
TTACTGATTCACAAAAAGGAAGACAGTTTGCCCACTCTTAGTGGCACAAATCAAAGCTGCATGCACTACATTATCCAAATTAGTCGTAACCAAATAGTTA
AAAAATTCTGCTGGGCACGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGTTGGATCACCTGAGGTTAGGAGTTTGAGACCAGCCTG
GCCAACAGGGTGAAACCCTGTCTCGTCTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCATGCCTGTAGTCCCAGGTACTCAGGAGGCTGAGGCAGGA
GAATCACTTGAACCCGAGGTGGGGCAGGCGGAGGTTGCAGTAAGCCAAGATCGCGCCATTGCACTCTAGCCTAGGTGACAGAGTGAGACTCCATCTCAAA
AAAAAAAAAAAATTCCATAGGATGTTCAACCATGTTTTCAGAGGCCGCACTGCATGAATGCGGGAAAATGTTGATGATCACTAATCAATAATCTGATATT
TAACAAAATATGGACAGGCCACTTATGCTCAGTTTTACCTTAGTTATTCCTTGGTATCCACAGGCCCAAGTCCCTTTAAATAAAATACCCTCATATTTCC
ATATAATCTACATACATTCTCCCATATACTTTAAATCATCTCTAGATTACTTATAATGTCTAATACAAAATAAATGCTATGTAAATGTAA

Expression



Full and truncated open reading frames discovered in TCONS_00213775

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.