Detailed information on ENST00000498487

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000468216 F-box and leucine-rich repeat protein 13 processed transcript ENST00000498487 1086 380 noncoding Cis

Sequence

>ENST00000468216 (537 nt)
ATTAGTATAACGTGAGGGCTGAATGCAGCCCATTCTCTGGAGAACTTCCTCACACACCGCAGCAAAGAGAAGACTGAAAGACAAACCTGGGTGCAGCCAG
AGAGGTCCAGATAGATGAGCTTGTGGCATCCATTCCCCAAGTTCAGATGGTGGTAAGTGCCATGGAGAAGAAAGAAGAAAAGGGATTGGGAGCACCCAAC
AAGTGGGAAGAAGTGTGATTTAAAATAGGGCTGAACAGGAAGTTTTCACTGAAAAGGTAACATTTGAGCCAAGACATGCAGGAGATGACAAGGACAGTGC
CATTTACTCCAAGCATCTCTGGAGCCCACACCCAACATGGTTGGTGACTGGGAGACAGAAAAGGATAGAAAAAAAAAAGGCTCAGGAAGACAACAATTCA
AGTCCTACCCTTGTGTGTGCATCTCAAGGCTGTGTTCTTTTAAAGAAGGAGAATTCTTTGAATTTCTTAAATCCGATGTGATGGTGAACTGCAGGCTTCG
GTTTTCATCATGCTGAGTCCTAACATTTGTGACTACTT

Expression



Full and truncated open reading frames discovered in ENST00000468216

In silico ORF/peptide predictions
>peptide 1 (54 aa)
MLHMATPGEVVTNVRTQHDENRSLQFTITSDLRNSKNSPSLKEHSLEMHTQGPL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT122527 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8NEE6|FXL13_HUMAN (Evalue: 3e-24)