Detailed information on ENST00000498905

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, mem... protein coding ENST00000498905 554 380 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000498905 554 380 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000498905 554 380 UTR3 Trans

Sequence

>ENST00000498905 (2709 nt)
GCAGGTTCCAGCCCCGACCCGGGCGCGCGGGGCCGACTAGGGTCGGGTCCAGTGTGCGGTGGTCGCTCCGCTCCGGGCCGCTCCGCTCTGGGCGTCAGGG<br />CGCGGGGAGCTGCCCCGGGGTTCTGTCCACCGGGGAGGAAAGCCACGAGCACTGAGCGCCTCCTGAGAGCCAGCCCTGACGTGAACTCATTTTATCTGCC<br />ACGACCCAGAAGGAGTCTACTGCTAAGATTTCAGCATGTCCTGTGGCTGAGTTAATCAGAGTTATGACAGGAAGGTACCGGGCACACCATCGCAATGCTC<br />CATCAATGCTAGTATGTTGTGTTCTTTCCTTCATATCAAGTCAACTCAAGCTTGCTCTACTTACCTGGTGTACACAGTCTAAGAACTGTAAGAAGACTGG<br />AGCAAAACCACTCCCCTGACAGTTGAGGGTCAAGCTGCTCCTCTGACTGAATTTGTGACCAAAAGAGAGCCACTCTTTTTCAACCAACATCTGGAAGCCT<br />TCAAGTGTCCTATAAAAGGGATCACTGAGTAACTGAACCAGGGATGTCACCTAGGGCATAAGCAGGATGGATTGTCATTAATTTTAGTTCTGAAAAAGGC<br />CTATTACTAAGATAAAAGCACTTCCTTCTGATGATAGCTAATTCACAAATTTACCTGGACAGCAAATTTGTTCACTAACCATTCCAGGATGGCCAATAAA<br />ATTAATTTTGTAAACTTGCCAGTAAAAACTAAAGCTCAAATTCATTTTGGCTACAAGTTTACTTTCAGGGAATTGAGACTTTAATCCTTAACTGGCCAGT<br />TTGCTGACAGCAACCTTTTCCTAAGTTAATCAGAGGCCAGAGGATCAGTTAAAATCAATTCTACTTTTTGGCAGATGCAGATTAATGTCTTAATGTAGTC<br />TGAACTCACACTTTTCACTCTGGAGTGAGTTAAGGCGGGGCTTATAGAGAGCCAGGGGATGGACTGACAAAACCCAGGAAGGATGGTCCACGCCTCACAC<br />TGCTGGTCAAGGGCTCCATCCGCAAGCCTGCATGGTACATCTGTGGATGGGAGAGCTTGATGCCCGGAGCCAGAGCTCCAGGCTGCGTAGGGGCTAAGAG<br />CTCATGGTACGGAGTTTTCTGATGGATACCAGGTGCTGTTTAACACAGGACTTTCTCTGTCCATAAACACATTAGTCATTATACAAAAGAGTCATCTGAA<br />GAATTTAAAAATGACCAAATGGAAATATAAATATAAAATATCAAAAAATATGTCTAATAGTTTACTTGTGCAGTGATGTCCCAGCCTTCCTCCAAACAGA<br />CCAAAACTGAGGAACCATTCTCAAGTACTTCTGATACAACCACAGCCAGCTGCATTATCCTGTGAAGCTAAGAGACAGGAAGGAGAACACAATTAGACCA<br />AGCGCTTTCTGAGTGCAGAAGTCAGAGAGAGTTGCTTTCAACCCTGGATAATCAAACGACTTAGGGATAAAGCGCTTGCACAAAAGAACCACATAATGTT<br />TTAAATACCTAAAGTTCTTTCAAATCAAGATTAAACAATGACACTTTTGACTGGATGCAATGACTCATGCCCATAATCCCAGCACTTTGGGAGGCCGAGC<br />CGGGCAGGTCATTTGAGGTTCGGAGTTCGAGACCAGCCTGGGCAACATAAGCAAGACCCTGTCTCGAAAAATAAAAATAAAAAAGATACTCCTATTTGTC<br />TATACTGTGTACTAAATGAGAAAAAAACTTTCAATATATTTGTGCTAAGTTTTTAAAGCCACATCAATTGGCTCAAAGTCCTTAATAAACAATTAAGGTA<br />TGAGAATAGTATATAGATTTTAAAACCAGATGTATAACATTGTAATTTTAAAAAATATTTTAATGATCATCAGACATAATTTGCAATTTGAATCCAACTC<br />TGAACAAGAACAAAAATGAAAAAACCCATCTCTTAAACAGAGCTAGGCTACTTTAAACACAGGAATAAGGCAAATGCCCTACTCAGTAATGAGAAGCTCC<br />TCATGTAACTGTTTCTACAACATAGCTATCACCAGGCCTGAATTCTTTTGGGCTCAGAATTTGTTCTAAGAAATGGCTATTATTAAAAAGTCAAAAAATA<br />ACAGATGCTGGCGAGCCTGTGGAGAAAAGGGAATGTATATACATTTCTGGTGGGAATGTAAATTAGTTCAGCCATTGTAGAAAGTAGTTTGGTGATTTCT<br />CAAATAACTTAAAACAGAATTACCATTTGACCTAGCAATCCCATTACTGAGTATATACCCAAAGGAATATAAATTGTTCTACCATAAAGTCACATGCACA<br />CACATGTTCAGTGCTGTACTATTCACAATAGCAAAGACATGGAGTCAACCTATATGCCCATCAACGGTAGACTGGATAAAGAAAATATGGTACATATACA<br />CCATGGAATACTACACAGCCATAAAAAGAATGAGCTTATGTCCTTTGCAGTAACACAGCTGAAGCAAACTAACACAGGAATGGAAAACCAAATACTGCAT<br />ATTCTCACTTATAAGTGGGAGCTAAACATTGAGTACACATGGACACAAAGAAAGGAATAGACGCCTGGGGCGTATTTGAGGTTGGAGGTGAGAGGAGGGT<br />GAGGATAGAAAAACTACCTATCAGGTACTATGCTTATTACCTGGGTGATGAAATAATCTGTACACCAAACTCCCAAGATATGCAATGTACCTATACAACA<br />AACCTACAT

Expression



Full and truncated open reading frames discovered in ENST00000498905

In silico ORF/peptide predictions
>peptide 1 (88 aa)
MHTHVQCCTIHNSKDMESTYMPINGRLDKENMVHIHHGILHSHKKNELMSFAVTQLKQTNTGMENQILHILTYKWELNIEYTWTQRKE

>peptide 2 (84 aa)
AGSSPDPGARGRLGSGPVCGGRSAPGRSALGVRARGAAPGFCPPGRKATSTERLLRASPDVNSFYLPRPRRSLLLRFQHVLWLS

>peptide 3 (57 aa)
MDTKKGIDAWGVFEVGGERRVRIEKLPIRYYAYYLGDEIICTPNSQDMQCTYTTNLH

>peptide 4 (51 aa)
MTGRYRAHHRNAPSMLVCCVLSFISSQLKLALLTWCTQSKNCKKTGAKPLP

>peptide 5 (50 aa)
RFQPRPGRAGPTRVGSSVRWSLRSGPLRSGRQGAGSCPGVLSTGEESHEH


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT017939 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 6.0E-51)