Detailed information on ENST00000500148

lncRNA-RNA interactions

Number of interactions: 98

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000217185 protein tyrosine kinase 6 protein coding ENST00000500148 614 282 UTR3 Trans
ENST00000227155 CD82 molecule protein coding ENST00000500148 667 317 UTR3 Trans
ENST00000257189 desmoglein 3 protein coding ENST00000500148 643 313 UTR3 Trans
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding ENST00000500148 609 287 UTR3 Trans
ENST00000371666 interleukin 13 receptor, alpha 1 protein coding ENST00000500148 515 314 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000500148 653 310 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000500148 681 271 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000500148 664 269 noncoding Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000500148 540 280 UTR5 Trans
ENST00000442007 antisense antisense ENST00000500148 610 272 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000500148 540 299 UTR5 Trans
ENST00000524750 CD82 molecule protein coding ENST00000500148 547 241 UTR3 Trans
ENST00000542869 protein tyrosine kinase 6 protein coding ENST00000500148 624 319 UTR3 Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000500148 606 314 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000500148 635 314 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000500148 666 310 UTR5 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000500148 708 306 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000500148 708 306 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000500148 680 276 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000500148 757 307 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000500148 702 274 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000500148 603 270 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000500148 667 317 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000500148 667 317 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000500148 675 312 UTR5 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000500148 703 274 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000500148 726 301 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000500148 726 301 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000500148 648 297 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000500148 708 285 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000500148 709 304 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000500148 653 275 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000500148 653 275 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000500148 663 284 noncoding Trans
TCONS_00088441 antisense novel protein coding ENST00000500148 607 257 UTR5 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000500148 665 300 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000500148 764 295 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000500148 658 305 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000500148 643 313 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000500148 675 274 UTR3 Trans
TCONS_00116669 desmoglein 3 novel protein coding ENST00000500148 643 313 UTR3 Trans
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000500148 673 315 UTR5 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000500148 736 296 UTR3 Trans
TCONS_00119477 zinc finger and BTB domain containing 7C novel protein coding ENST00000500148 612 298 UTR5 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000500148 667 292 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000500148 667 292 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000500148 644 294 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000500148 682 303 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000500148 652 287 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000500148 681 313 UTR3 Trans
TCONS_00157915 cadherin 4, type 1, R-cadherin (retinal) novel protein coding ENST00000500148 687 314 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000500148 624 319 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding ENST00000500148 624 319 UTR3 Trans
TCONS_00163092 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000500148 535 307 UTR3 Trans
TCONS_00163093 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000500148 535 307 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 656 297 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 698 274 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 656 297 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 698 274 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 656 297 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000500148 698 274 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000500148 623 268 UTR5 Trans
TCONS_00167295 BH3 interacting domain death agonist novel protein coding ENST00000500148 657 314 UTR3 Trans
TCONS_00180605 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000422253} novel protein coding ENST00000500148 602 314 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000500148 678 310 UTR3 Trans
TCONS_00184525 lincRNA novel protein coding ENST00000500148 698 309 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000500148 635 269 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000500148 600 304 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding ENST00000500148 673 294 UTR3 Trans
TCONS_00190799 sorting nexin 25 novel protein coding ENST00000500148 625 274 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000500148 666 263 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000500148 644 306 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 627 276 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 711 306 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 627 276 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 711 306 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 648 285 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 751 313 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 654 278 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500148 751 313 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000500148 700 297 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000500148 700 297 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000500148 740 314 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000500148 608 311 UTR3 Trans
TCONS_00229066 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E novel protein coding ENST00000500148 691 320 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000500148 654 263 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000500148 644 299 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000500148 644 299 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000500148 644 299 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000500148 676 275 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000500148 661 316 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000500148 696 276 UTR3 Trans

Sequence

>TCONS_00247058 (2223 nt)
AAGCGACTCGTGGGCGTCAATACTGGGCTGAGTTTGTGGCGCGCTTAGTGATGGGATGGCCCTGTGCAGGACGCCGACACGAAAAGATGAAGAGTTCAAT
CCGTGCTGTCTGAACTCACAGTGTAGCAGGCGAGATAGACGGGAAGATCGGTAGGGTGGGAGATGCCGGAAAGGCTTCCCGTGAGACTGGATAAGAAATC
AAAAATCTGGTGAAATTGCCGGCAAGAGGGAGTTAAGGACATTCCAGGCAGAGGCAAGCTATTTGACAGACCATATGCTCTATTGAACTTTGCCACTGCA
TCACAACTAGACCCTGAACAGGATGGATTTCTGGACTTCTGAAAGTTGGTCCTTGCTGGCTGATCCAGCTTCCCCGTCAGCATATGGTGAGCAGTTCGGT
GAGAGGACCACACTTCCAATACTGGCAGTCCAGATTCCTAAGATGAGGACACAGCATCCTGGGCCACTGTCACTAATACAAATTTGCCTCTGGAGGGACT
CTACGGAAGATAATTCCCCTGAAATTTGGAGAGTTGAATTAAGCTAGGACTGATTCTGGCTGGAATTTGTGGTGGCTACGTACCCTAGAGGGCCTCAAGG
AAACCCACGGTTCAAGACAGCCCTGACAGATTCTGGAGTCTAGAACAGAAATGGATTTGAACATGGGCAAGGCCAACCACCCAGTTCACGGCCTGTGTAC
AGCAAAGATTACGTTACAGCCTGAGAGCTAAGCCTGGAAGCTCTTTCATCCATCCGTTTGTCCATCTATCCATCCATCTGCTCATCCATCCCTCCATCTG
CTCAACAAACGTTAGAGAATCAATCCTTGTGTCAGATACTGGGGCTGCCCTCAAGGAGCTTTTATAGAGTTCAGGGTACAGCCAGGTGGGGGAGACAGAT
CACTATAAAAACCTACCACTATAATCCAAAGGACAAGAGCAAAAATAGTAAAGAGGAGAGAAGACCCAAATTTGCCTGGTGGGTCAGAGAGGGCTTTCTA
GAAGAGGTAAAAAATCTTCGGGGCTATCACTTCACCTTGCCTGGTGGATAAAGGGAGGACTTTCCAGATACAGTGGACAGAATGTGCAGAGGCAGGAGCC
ATGAGTGGCAGAGGCAGGGGAGGGACTGCAGAGACAGGTTGGAGCCAAAGCACGTGGCACTGGAGCCATAGCCAAAGGAACAAACTGTGAGACCTGGGAC
TTGAATTTGGAGGTGGTGAAAAGTGACAAGGTCTTCACAGAAGAGTGATTTTTTCAACTTAGGGAAGGCTGACCCCAGACCAATGCTGCCAAAGTGTGGT
CTGTGGGCTGTTAGCAGTTCGTGACGATGTAAGTACAGGAATTGAGATTAAGCATTTAGAACACCTACAGCACTTTGATAGTCATTTTACTTTTTAAATT
TTGAGCTGGCATTTTATATGCCTGGTTTTTTTTTGTTTTTGTTTTTTTATTTTTTTTGAGACAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGC
GATCTCTGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCATCCTCCCAAGTAGCTGGGACTGCAGGCGCCTGCCGCCTCGCCCAG
CTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGATCTCGTGATCTGCCCGCCTTGGCCTCCCAAAA
TGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCCTTATTCTCTTTTTCTAATAGTTGCACTTTATCATATTTTACAAATGTGTGAGTCTGCTATGGAT
TAGAAATTAATAAGAGATTTTGCCACAGATAGTTTGAGAAGCCCAGCACTGCCACTCAACAAATGCTGGTGCATTCAGATGGTGAAATATTCTGCAGCTA
TTAAAGGAGTTAAAACTGCCTCCACTTACCTGGAGGCCCATCTGTGACACCTTTTTAGGTTAAAAGGAAAAGAAAAACTTGCTTAGGACTGAATATGAGC
GGTTGCAATTTGTAACAATGATGTATATATACATATACATTTTCATGTATTTGTATGAACATAAAAGTATTGAAGGATATTCATCAAACTGCTAAAAGGG
TTGCTTCAGAGTAACGGACTCGGAGAAGGCAGATTAATTTTCTCTTAATGGAACTCTGTATTGTATCACTTGTAAAAATAAGCATGTGTTATCTTTATGA
TAAAAAAGTAAAAACCTAAAAAAG

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.