Detailed information on ENST00000500365

lncRNA-RNA interactions

Number of interactions: 28

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding ENST00000500365 626 259 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding ENST00000500365 610 275 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000500365 608 265 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000500365 557 279 UTR5 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000500365 552 271 noncoding Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000500365 503 262 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000500365 606 275 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000500365 606 278 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000500365 624 260 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000500365 603 259 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000500365 601 281 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding ENST00000500365 607 263 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000500365 624 277 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500365 610 269 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500365 610 269 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000500365 618 263 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000500365 610 257 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000500365 610 257 noncoding Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000500365 552 233 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000500365 628 269 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000500365 628 269 UTR5 Trans

Sequence

>TCONS_00243482 (2493 nt)
AAGACTAATGACCGAAGCTTCAAGACTTTGACATGTGTGAAAACATGAAATGACCCTTGGCTCTTATTGTTCTTGCTGGTGTGGTATGTTCACGGCTGAA
AAGATGGTCAGAAGGGGAAAGGAGGAAGTGAGAAGAAAGAAACAGGGAAATGACAGAGTGTTGCTCAGTTACCCAGGCTGGAGTGCAATGGCATGATCTT
GGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCGGTTCTCGTGCCTCAGTCTCCCAAGTAGCTGGGATTACAGGTATGCACCACCATGCCCAGCCAATT
TTGTATTTTTAGTAGAGGCAGGGTTTCACCATGTTGGCTAAGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCTGCTTCAGCCTCTCAGAGTGCTGG
GATTACAGGCATGAGCCACCAAGCCCGGCCTGAAATACATTTAAATAAATGAAGATGGAGAATCAGACATTACTTTCATTTATCTGAATCTGGTGTAGTT
TAATTAATCTGTAATTGTAAGTCTTTGAATCATATGTCAATATTCTATTTTGTTAGTCATGATTTCTAAGTGTTACATAACTGTGGCCCCAGCCACTTTA
TATTTTGGTATCATGACAGAAGACTCTGATTGTGGTTATTTTCTACCTATGCATTTATTCTTAGTGATATATGTTGGTTAAATTATGGCATAGTTTTAAA
ATACATGACAAAAATAGCTAACAGTAAAGAAATGTCTTTGTTTCTGGTTGAATAAACTGACCACGCAAGGTTCCAATTTAAAATAAATTCTAAACGAATC
ATGTTATTTTCCAAAACTGTTCCTCCTCTCAGTAAATGAAATCAATATCCACCCGGTTACCCCAAGACAGAAATCTCAAGATCATCTGTGACTCCTTCCT
CTTCATCTGCCACAAGAAGAGTAGCTTCTATCTCCAAAGCTAGTCTCTGATCAGTCTACTTCTCTTCCTATAGCCTCTGCTTTAGTTCAAATCTAGAATC
CTGCTGTGGTGGTGCTGTGGCTTCCAAGTTCATCTTCTTCCAATCCGTTCTCTAAACTACAGTCTTGCTCTTTCTAAGACTCAGATCTTATAATTTTACT
TCCCTTCATAGGTTGAATTTAACCTGCTAAATCACATAAAATTTTTCTGAAGATACCAGCCTTTCTGCCTTAATCAAACACATTAGCCAAATCCATAGCA
TTACTGGGATAAAGCCTGAAGATCCCAAATTGATAAGGCATCTGGATTCCCTTTGATAACAGTATTCAATAACAATGAACACCTACTGAGTATACTATTC
CAAGCATTTAAAGTGTATCAACTCTTTTCACAAAATCAACAATAATTATTATTGCTACCATTTATTGAGAGTCTACTTTAATCCAGGTGTTACATATTCA
TGTATTCATTATTATTACCTTTTTTTTTGAGACGAAATCTTGCTCTGTTGCCCAGGCTGGAGTGCGATGGCATGATCTTGGCTCACGGCAAACTCCGCCT
CCCTGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCCGGGATTACAGGCATGTGCCACCATGCCCCGTTGGCCAGGCTGGTCTCGAACACCTTA
CCTCAGGTGATCCTCCCACCTTTGGGATTACAGGTGAGCCCAGCCTATTGTTACCTTTAAAACCACCCTGCAGGGTAGCTCTTACTGTCTCCATGAGGAA
TATCAGAAAAGGGAAAGGACTTCCTGGAGGGCTGGTTCTGCCTCAAGCCAATCAGCTGACACTAAGCAGTGAAGCCGGAATCTGAGGTCCCTCTGCCTGC
CCTGGTCTTTGCTCACCCTGACAACCAGACACCTCACTGTGTCCTGAGCAGCATAGATGCCACACGCACAGTGCCACATAGAGAAGGGTGATGTAAATGA
AAATTAAAACACTGTGACAAAGTCAAGCAGGGCATTTGTTTTTGTTGTTGTTAAGTTATTTTTGGTAGATACAGGGTCTCACTATGTTGACCAGGCTGGT
CTTGAACTCCTGGGCTCAAGCAATCTGCCTGCCTCAGCCTCTCAGAATGTTGGGATTATAGACATGAACCACTGCACCCGGCCAGTGTCAGTCTTTGTTC
CCTACAAGTGAAATCAAAACAGCCTCACGCCTGTAAACCCAGCAGTTTAGGAGCCCAAGGTGGAAGGATCGCTTGAGCCCAGGAGTTTGAAACCAGTCTA
GGCAACATAGTGAGACCCTATCTATACAAAAATAAAAATAGCCTGGGCAGGGTGACTCATGCCTATAATCCCAGTACTTTGGGAGGCCAAGGTGGGTGCA
TCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGAGAAACCCTGTCTCTATTAAAAATACGCCTGTAGTCCCAGTTACTCGGGACGCTGAGG
CAGGACTGCTTGAACCTGGGAGGTAGAGGTTGCAGTGAGCCGAGATCGCGATACTGCACTCTAGAGCCTGAGTGACAGAGTGAGACTCCGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00243482

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.