Detailed information on ENST00000500365

lncRNA-RNA interactions

Number of interactions: 28

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding ENST00000500365 626 259 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransf... protein coding ENST00000500365 610 275 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase fa... protein coding ENST00000500365 608 265 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000500365 557 279 UTR5 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000500365 552 271 noncoding Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000500365 503 262 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000500365 606 275 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000500365 609 280 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000500365 606 278 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000500365 600 264 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000500365 624 260 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000500365 603 259 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000500365 601 281 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding ENST00000500365 607 263 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000500365 624 277 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000500365 610 269 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000500365 610 269 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000500365 618 263 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, mem... novel protein coding ENST00000500365 610 257 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, mem... novel noncoding ENST00000500365 610 257 noncoding Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000500365 552 233 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000500365 628 269 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000500365 628 269 UTR5 Trans

Sequence

>ENST00000500365 (2494 nt)
AAGACTAATGACCGAAGCTTCAAGACTTTGACATGTGTGAAAACATGAAATGACCCTTGGCTCTTATTGTTCTTGCTGGTGTGGTATGTTCACGGCTGAA<br />AAGATGGTCAGAAGGGGAAAGGAGGAAGTGAGAAGAAAGAAACAGGGAAATGACAGAGTGTTGCTCAGTTACCCAGGCTGGAGTGCAATGGCATGATCTT<br />GGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCGGTTCTCGTGCCTCAGTCTCCCAAGTAGCTGGGATTACAGGTATGCACCACCATGCCCAGCCAATT<br />TTGTATTTTTAGTAGAGGCAGGGTTTCACCATGTTGGCTAAGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCTGCTTCAGCCTCTCAGAGTGCTGG<br />GATTACAGGCATGAGCCACCAAGCCCGGCCTGAAATACATTTAAATAAATGAAGATGGAGAATCAGACATTACTTTCATTTATCTGAATCTGGTGTAGTT<br />TAATTAATCTGTAATTGTAAGTCTTTGAATCATATGTCAATATTCTATTTTGTTAGTCATGATTTCTAAGTGTTACATAACTGTGGCCCCAGCCACTTTA<br />TATTTTGGTATCATGACAGAAGACTCTGATTGTGGTTATTTTCTACCTATGCATTTATTCTTAGTGATATATGTTGGTTAAATTATGGCATAGTTTTAAA<br />ATACATGACAAAAATAGCTAACAGTAAAGAAATGTCTTTGTTTCTGGTTGAATAAACTGACCACGCAAGGTTCCAATTTAAAATAAATTCTAAACGAATC<br />ATGTTATTTTCCAAAACTGTTCCTCCTCTCAGTAAATGAAATCAATATCCACCCGGTTACCCCAAGACAGAAATCTCAAGATCATCTGTGACTCCTTCCT<br />CTTCATCTGCCACAAGAAGAGTAGCTTCTATCTCCAAAGCTAGTCTCTGATCAGTCTACTTCTCTTCCTATAGCCTCTGCTTTAGTTCAAATCTAGAATC<br />CTGCTGTGGTGGTGCTGTGGCTTCCAAGTTCATCTTCTTCCAATCCGTTCTCTAAACTACAGTCTTGCTCTTTCTAAGACTCAGATCTTATAATTTTACT<br />TCCCTTCATAGGTTGAATTTAACCTGCTAAATCACATAAAATTTTTCTGAAGATACCAGCCTTTCTGCCTTAATCAAACACATTAGCCAAATCCATAGCA<br />TTACTGGGATAAAGCCTGAAGATCCCAAATTGATAAGGCATCTGGATTCCCTTTGATAACAGTATTCAATAACAATGAACACCTACTGAGTATACTATTC<br />CAAGCATTTAAAGTGTATCAACTCTTTTCACAAAATCAACAATAATTATTATTGCTACCATTTATTGAGAGTCTACTTTAATCCAGGTGTTACATATTCA<br />TGTATTCATTATTATTACCTTTTTTTTTGAGACGAAATCTTGCTCTGTTGCCCAGGCTGGAGTGCGATGGCATGATCTTGGCTCACGGCAAACTCCGCCT<br />CCCTGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCCGGGATTACAGGCATGTGCCACCATGCCCCGTTGGCCAGGCTGGTCTCGAACACCTTA<br />CCTCAGGTGATCCTCCCACCTTTGGGATTACAGGTGAGCCCAGCCTATTGTTACCTTTAAAACCACCCTGCAGGGTAGCTCTTACTGTCTCCATGAGGAA<br />TATCAGAAAAGGGAAAGGACTTCCTGGAGGGCTGGTTCTGCCTCAAGCCAATCAGCTGACACTAAGCAGTGAAGCCGGAATCTGAGGTCCCTCTGCCTGC<br />CCTGGTCTTTGCTCACCCTGACAACCAGACACCTCACTGTGTCCTGAGCAGCATAGATGCCACACGCACAGTGCCACATAGAGAAGGGTGATGTAAATGA<br />AAATTAAAACACTGTGACAAAGTCAAGCAGGGCATTTGTTTTTGTTGTTGTTAAGTTATTTTTGGTAGATACAGGGTCTCACTATGTTGACCAGGCTGGT<br />CTTGAACTCCTGGGCTCAAGCAATCTGCCTGCCTCAGCCTCTCAGAATGTTGGGATTATAGACATGAACCACTGCACCCGGCCAGTGTCAGTCTTTGTTC<br />CCTACAAGTGAAATCAAAACAGCCTCACGCCTGTAAACCCAGCAGTTTAGGAGCCCAAGGTGGAAGGATCGCTTGAGCCCAGGAGTTTGAAACCAGTCTA<br />GGCAACATAGTGAGACCCTATCTATACAAAAATAAAAATAGCCTGGGCAGGGTGACTCATGCCTATAATCCCAGTACTTTGGGAGGCCAAGGTGGGTGCA<br />TCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGAGAAACCCTGTCTCTATTAAAAATACGCCTGTAGTCCCAGTTACTCGGGACGCTGAGG<br />CAGGACTGCTTGAACCTGGGAGGTAGAGGTTGCAGTGAGCCGAGATCGCGATACTGCACTCTAGAGCCTGAGTGACAGAGTGAGACTCCGTCTC

Expression



Full and truncated open reading frames discovered in ENST00000500365

In silico ORF/peptide predictions
>peptide 1 (86 aa)
MYSLLLPFFLRRNLALLPRLECDGMILAHGKLRLPGSSDSPASASRVAGITGMCHHAPLARLVSNTLPQVILPPLGLQVSPAYCYL

>peptide 2 (63 aa)
MTECCSVTQAGVQWHDLGSLQPPPPGFKRFSCLSLPSSWDYRYAPPCPANFVFLVEAGFHHVG

>peptide 3 (55 aa)
MPIIPVLWEAKVGASLEVRSSRPAWLTWRNPVSIKNTPVVPVTRDAEAGLLEPGR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT027908 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q6B4Z3|UTY_PANTR (Evalue: 1.0E-30)