Detailed information on ENST00000500447

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000500447 505 264 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000500447 505 264 UTR3 Trans

Sequence

>ENST00000500447 (1965 nt)
GAGAGGGTGCCAGCGGCCGCAGCTGAAGTTGGGCCGAGAGCCGGCGACGGCCCCGCGCCGGGGTCGCAGGCCTGCAGGAGTTGAGGGCTGCACCTGCTCG<br />CTGGAGAGGGAGAGGCAGATTTAGTGGACGCCTGGCATGGACTCGGACTGGCCTTTGGAAGCTCCCTGCCCTGACGGGGTTGCCTGTCACCACTGCGAAG<br />TGAGGCTTGGCAGGACCTGCACCTGAGAAAGGCTGTGTGTGGTCTTGGGGTCCACACCTGCAGAGCTAACTTACTGCCAGACGGCGACTTACTGTGGGCC<br />ACCCTCAGTGAACCGGGGTGTCCTCAGCTGGCCCTACAGAGCACTTCTGTGCTGGGGATGAGTAGGAACTCTGGGCGAGGAGGGTCCCAGCGCCGCCCCT<br />CGATACAGCCTGGCTCTGCCCTCTGCCCGTACTTACACCAGGTGGGATCCCTGCCCTGCATTGCCTGGGGATTGGCTGGGCTTGGGCCCGCCCTGCTGTG<br />GAACTGGATGTTTTCAGGGAGCCCAGCCTTTCCTCATGTCAACACAGTTCACAATATAGTTTTCAAAGTACAGTTTAAAACTCAAAAGTAAACTTTTCAG<br />CAACTCAAAGGTTTGCTGAGTGATCTGAAGCACTCTGGCCACTTTTTGGGGCCATGGGATTTGGTTCACCTGAAACAGCCAGTGAGAGGCCGGGTGTGGT<br />GGCTCACACCCGTAATCCCAACACTTCAGGAGGCAGACGCGGGTGATCGCTCACTTGAGATCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAACCT<br />CGTCTCTACTAAAAATACAAAAATTAGCTAGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAAGAGAATCGCTTGAACCTGGG<br />AGGTGGAGGTTGCAGCGAGACGAGATTACGCCGCTGCACTCCAGCCTGGGTGACGAGAGACTCTGCCTCAAAAAAATAAAAAAATGAAACAGCCAGTGAG<br />GAGGAAGGCTCCCCGCCTTCCCCCCGCCGGAACATAGCCATAGCTGCTGCTGGGACACCCTCTTGGTGGGGAAGAAGGCTGGTTAGCTTCATCAGAGCCA<br />GCAGCAGCAGACCAGGGACGGGCACCTAGGCAGTGGCCTCAGAGTGAACAGGAGTTCCTCAGAAACACACACAGGGACGGCGTGGCGCATGCTCTGCCAG<br />CTCCATGCCTCCTTCCCATTGTGGGGCTGGGGTACGTAGGGCAGAGCTCATGACCTCCGGGAGGACATGGGGGTGGGCTCTGGATGGCACCTGGCATTGC<br />CCCCTGCTGGCCTATGTGACGGTGTGGAGGGCTGGTCACAGAGGTACGACCATCCCTCCAGAATGTGGGTCGGGGCTGTGGATGGAGGAGTAGGCCCCTC<br />ATATCCCAGGCCTGCTGCCCAGGCACAACCCACTTGGCCTATGCATTCCAGGCTCCATCCCATGTGACTCTGGGCTTAGCCCCTTCTGGGGCCACAGGTC<br />AGGCAGGTCCAGGCCCCAAGGACCTCCCAGTGACAGGCGACTGTGAGCTGGGCAGACAGGAGTGAAGTCAGGTGGGGGTTCTGGCTTGCTGACACCAGCG<br />TTTGGAGCCTCCTGCTGCTGCCTGGCTTCCCTGCATTCCCTGTTCCCTGCCTCAGGCAAGAAATAACCAAGCCGAGTTGCCTCTGCACAGCAGTGAGCTC<br />CTGGTGGCCCTGGCTTCTGGGGAGCCCTGTGGATGGCTTCCTTGCCCAAGTCCAGGCCTTCTTGTTCCCTTTGTGTGCTCCAGAGAAAGGGGGCAGCACC<br />AGATCCAGATCCAGGGCCAACCAACAGAAAGCTGAGTCCATCCCAAACTCGCCCATTCTCAGAGCACAAAGACCCCATGATCTAGGGCAAACTTGTCCAA<br />CTGTTGGCCCATGGAACAGCTTTGAATGCAGCCCAACACAAATCTATAAATTTTCTTAAACATTG

Expression



Full and truncated open reading frames discovered in ENST00000500447

In silico ORF/peptide predictions
>peptide 1 (77 aa)
MSRNSGRGGSQRRPSIQPGSALCPYLHQVGSLPCIAWGLAGLGPALLWNWMFSGSPAFPHVNTVHNIVFKVQFKTQK

>peptide 2 (66 aa)
MGVGSGWHLALPPAGLCDGVEGWSQRYDHPSRMWVGAVDGGVGPSYPRPAAQAQPTWPMHSRLHPM

>peptide 3 (62 aa)
MPPSHCGAGVRRAELMTSGRTWGWALDGTWHCPLLAYVTVWRAGHRGTTIPPECGSGLWMEE

>peptide 4 (50 aa)
MASLPKSRPSCSLCVLQRKGAAPDPDPGPTNRKLSPSQTRPFSEHKDPMI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT017280 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 1.0E-21)