Detailed information on ENST00000501016

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000501016 583 287 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000501016 520 293 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000501016 640 285 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000501016 606 290 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000501016 629 295 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000501016 629 295 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000501016 629 295 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000501016 583 287 UTR3 Trans

Sequence

>TCONS_00153158 (1988 nt)
AAAACAAGCAAATTTTATTAAAGGAAAATTTTGCAGGTTTAAGGTTTGCAGGTGAAATTTTGTAGGTGAAAAGGTTTACTTTTCACCAGTCTGTTCTGGC
ATGCTTCTAATGATGTCAGAGTCACCTAAAAAATAAAAATAAAAAAACAGTAATTTTACAATTCATTTAATAGCAACTGGTACCATAAAATTTCTCTACC
TTTGGTTATCCCTTCTGTAGACAATGGTCTGCAAATTAGCACTGACTTTTTGCAAAAGTTATCACATTAGCTGTACTGTCATTTTTCTTAAGGTTGACCA
AAGATAACCTAGAATCACAGCCATTATATAATCACATAAAATGATCATATAATAAAATTGGTTTATCACCAGCATTTATAAAACCAGACCTAGGGAAAGA
ACTAGGTTTGGGGACACATGCATGGTCTTAATATAGCGAATGTTTAGCCTGTCCTGACTATTACAAAATCAGAACAGCGAGAATATTCGCAGTATTCTAT
GAATCAAAGATTCACAATTGGAAAACAGAATGATGTAGATTTTTTGGCACTTTTTTTTTTCTCAAGCTAATTTTACATGTCTGTTCTCAAGAAGCAAGAA
TTACTTTCTTCTGTTTTGCCAGATTATTCTCTCCTTATAATTTCACCTTTTACCAAATCTATGTCATTATTTCATAGGTACTTCATCAAATGAAATTCAT
TATCTGACAGTAAAAATTTTAACTTATAATAAAGCCAATTATAATGTATTGGCATTCATTACCAATTCTCTACAAAATACAACTACACGATATGCCTTGC
TAGATCCATATTCTATCTGAATTTAGGAACCAAAGACATTTGCGTAGTAAGAAATACTTGTCCAGACATTACATTAGAAAGGCAAAAAAAAAAAAGACTT
TATGATTTAAAAAGCATACCTGGATCAATGATAGCCAGTGTGCACACTCTGTAGTATTTTCCGCATGCTGTGCCCAGTTCAATATTATTGCCACTGTAGT
GATGGACACCAGTTTTAGCCAACATAGCATAGTACTCTATTTCAGATTTCCTTTGGGAACCAAAATGGGCAAATAAATAAATGCGATACCAAGTGACTGA
CAGACTAAATGTTACTACTTCTTTTACTAGTGTTAATGTTGTTAAGGCCTTCAAAAAGTAACAAAATCACATATTACTCTTAAAAACATCATATTCATTA
TCCAATACAAACCAACATTTGTATGTATCCCTTGCAAGTGAAGGGGCAACCAGCAAATATCTAATCAACCCCTACTATGTTTAAGACAGTATCAATACTC
ACGGAAGAGGGTAAGATGCAAATAAAAGAAAGCAAAGCATTATCTAGCATTAGTAAGGACCACATACTTTATATTTCCATGACAATCTCTAAAGTAGGTA
TTATGTACTTTTTTTTTTGAGATGGAATCTCATTCTGTCGCTCAGGCGGATCGTGCAGTGGCACGATCTCAGCTCACTGCAACTTCCACCTCCCGAGTTC
AAGTGATTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGATTACAGGCGTGCACCACCACACCCAGCTAATTTTTTATATTTTTGGTAGATGGGGTTTCACC
ATGAATCGGAAAGGAGTCCTATACTATCTTGCCACTCAATTATGTGAATCCACATACCAGCAATAGTGCTACAATGTATTAGTTAAAAAAACACCTCAAG
CCGGGCACGGTAGCTCACACCTGTAATCTCAGCAGTTTGGGAGGCCGAGGTGGGTGGATCACCTAAGGTCAGGAGTCCGAGACCAGCCTGGCCAGCATGG
CGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCATCTACTCGGGAGGGTGAGGCAGAATTGCTTGAAC
CTGGGAGGCAGAGGTTGCAGTGAGCTTAGATTGTGCCATTGCACTCCAGCCGGGGTGACAAGAGCAAAACTCTGTCTTAAAAAAAATAA

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.