Detailed information on ENST00000501405

lncRNA-RNA interactions

Number of interactions: 36

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000501405 617 289 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000501405 617 290 UTR3 Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000501405 603 281 noncoding Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000501405 600 283 noncoding Trans
ENST00000590442 zinc finger protein 532 retained intron ENST00000501405 605 288 noncoding Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000501405 600 283 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000501405 602 288 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000501405 602 288 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000501405 617 284 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000501405 617 290 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000501405 617 290 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000501405 617 290 UTR3 Trans
TCONS_00099311 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000501405 617 287 UTR5 Trans
TCONS_00099312 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000501405 617 287 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000501405 651 279 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000501405 651 279 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000501405 569 288 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000501405 628 289 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000501405 709 291 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000501405 625 282 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000501405 615 289 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000501405 601 284 noncoding Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000501405 638 288 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000501405 628 277 UTR3 Trans
TCONS_00198052 NSA2 ribosome biogenesis homolog (S. cerevisiae) novel protein coding ENST00000501405 601 279 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000501405 607 289 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000501405 607 289 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000501405 607 289 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000501405 617 289 UTR3 Trans

Sequence

>TCONS_00249683 (390 nt)
AAATAGAGTTACATAGAGGATAAGCAACATCGTTTCTTAGCAGTAAAGGTGTCCTTCTGGAGAGATAGAGCGTGCCATTATTCTGGCTTGATATTAACAG
GTCAGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCTGAGGCAGGTGGATTACCTGAGTTCAGGAGTTCGAGACCTGCCTGGCCA
ACATGGAGAAACGCCATCTCTACTAAAAATACAAAATTAGCCGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAAGATAATC
GCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCCTGCGCTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00249683

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.