Detailed information on ENST00000502188

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000332592 DCN1, defective in cullin neddylation 1,... protein coding ENST00000502188 625 299 UTR3 Trans
ENST00000375403 DCN1, defective in cullin neddylation 1,... nonsense mediated decay ENST00000502188 625 299 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000502188 520 286 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium m... protein coding ENST00000502188 540 312 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000502188 579 281 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000502188 509 286 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich ... protein coding ENST00000502188 543 288 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000502188 516 286 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000502188 578 296 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000502188 520 284 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000502188 520 284 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ens... novel protein coding ENST00000502188 532 313 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000502188 627 287 UTR3 Trans
TCONS_00219473 WD repeat domain 27 novel protein coding ENST00000502188 512 310 UTR3 Trans
TCONS_00234826 zinc finger, C2HC-type containing 1A novel protein coding ENST00000502188 623 281 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 9... novel protein coding ENST00000502188 621 280 UTR5 Trans

Sequence

>ENST00000502188 (3084 nt)
GAGACAGAATCTTGCTCTATCTCACACACACACACACGCAAAGTTCAAATTGCAGATTTCAAACTAGCTTTAAAATATAACGAACCAAGCACATCAAATA<br />TACTAAATAATGTAATAACTTAGACACCTTTGCCCATCATATTAAAAATAAAAAAAAAAACACAACCTTTCTTAGTGAAAAAATTTTATCTAATAGTGTC<br />AAGCCATTGATTCAATGACCCCACCTTTTCTGGGTTATTTTAAAAATGGGAAGAGGGCCAGGTGCAGTGGCTCGTGCCTACAATCCCAGCACTTTGGGAG<br />GCTAAGGATTATAGGCATGAGCCACCATGTTTGTCCAGCAAAGTCAATTTGAATGTCACATCTAGCCCCCAAAATGGTGTCAGAATGGAAACATCTCAGT<br />GTGACAAACTAGATGAACTACAGAATTTAGCAGACTCATTACTCAAAGAAAATGAGGCTTAGGCTAAAAAACAAAACAGATACACAAATATGTAACAAAC<br />AAGTATTAACTTGAATTGCAAAGGGAAAATCGATTTACATGAGAACATTAAACTATTGCCACTATCATCACATGTATTACTGCCACGGTAAGAACTCTGG<br />GTTCATACACATTTAATAAGTAAATAAATATATCTATAATTGTAAGATTTGGGGAAGCTAATTGCTAGTAATTTGCCATAAAACTTAAGTTCATTACTGA<br />CCCTGATGGAGAAAATGAGAAAGGCTTGCTGAACTGCCCAGAAGCAGATGGGGTTGAAGTCACAGCTGTTTCTATCTTGGCTGTCCCTGAAATTATGGAA<br />AAAAAAAAAAAAAAAAAAAAAAAAGAATATTACAAAAAGACAGAAACACTGTTCCAGTGTATAATTCCCTGTAGCTCAGCCTGTGAGGTGCTGCTTAGCA<br />CCACATGTGCCTTCTGTGACACGTCAGTGGCCATGGGGAGTGAGCACGTTGCCTCACTTGTGTTTGAGGTCTCTGAAATTGCTCCGTGGCTCTGTCAATG<br />TTAATTCCAGTCTAAGGTGTGCCATCTTCTCCTTTACAGAAAATATATCAAAATAATTCTAGTATAGTTTAAATGTACAGTTTTAAAAGTACACTCTTAT<br />ATATTTCAATGGTATGGGAAAATGCTTATAATGTGAGGCTAAGCCCCCTCCCCACAAAAGTAAATAAAACTATATATAATGTAGCTTTATAATTATTTGA<br />AATTAATCTATGCTGAAGGACAAAAATCCAAAAGAGAAATAGGTTCATAAGCTAAATATTTCTGAGTAGTGACTTTAAGGCTGTTTACTTCTATATACAT<br />TTCTGCATTTTCCACAGATTTTGTTGGCATTTAACAAATAATCGTGTTCTTTTTTTAAAATTACAGATGTAAAACATGATTGCTATAATATGGAGACATG<br />CAAAAAGGTTAAAAGTGCAATCCATCATTCTCCCCATGTTCGATTTCACTCTAACTACTTACTTATAGTTTGGGTACAATCTTCAATCTTTTCCCTACTG<br />CTCTACTTTATTTATTTATTTATTTAGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGACTCACTGCAATCTCTGCCTCC<br />CAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGAACTATAGGCATGCACCACCATGCCCGGCTAATTTTTGTATTTTTTTTTAGTAGAGA<br />CAGGGTTTCATCACGTTGGCCAGGCTGGTCTCGAATTCCTGACTTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGACATGAGCCA<br />CCAGGCCTGGCCTTGCTCCACTTCAAAAGGGGGAAAGGAAAGAGGAAAACTATTTAAAAGCCCAAATCAAACGAAACTAAACCAAACAACAACAAGAAAA<br />AAAAAACACCAACCTTCTAAAATAAACAAACACAGGGTAGATGGCAGTACAAATATTTTTAAAACTACTGATATACAATGTAAAATGTACAGGATGAAAA<br />GTCACAATCTAAATCATCAGCAGAGTACTAGTTAAATTTAACAGGGTATAACTACACAATGAGGTTGTAGACAGCTCTTAAAATGAGTAAGGTGGATCTG<br />TATCAGACCTGCAGAGACCAAGACATTTATTGTAAGAGGGGGCAGAGAAGGGGAAATAAGTTACAAAATCAATATATATAGGATATACAGTATATAGGAT<br />ATTTTTCTTTAAAAAACAATGAAGTAACCTCAAGAGATATACATGAAATCATGATCTCTGGAATACAGAATCTATAGGGCAGCTTTCACATTCTACATTA<br />TATATCTCTACACCATAGGCTTTTTCTGGGCATGTAATAGTTTTACAATCAGAAAAACAATGAAGGTATTTCCATTACTAATAAGAGAACTATTCTCTAG<br />AGGTTTTAGAAATGCTCTTTTTCAAAAAGAAACTTTTTGCAAACTCTTAAGCAGCACCTTTCAGGGAAGTTTTCCTACCAAAAGAAAAAAGTTCTTTTCT<br />AAACCTTGATTACCTGGCAAGTGAAAACAGAAGTGAACACCTCGTAACAAAAGAGAGGATTTCATGATCAGCAATGAATGGTGAATCTCGGAAATTTCTT<br />GCAAGTCACACTACTTGCCCAGACATGCATAAAGCAAAGTTCCTTAGGTTTCTTTGATTCTAACTCCAAGAGTGACAAAAACCTCTCCAATGAAGTCCTT<br />GAAAAAAGAGTATATGATCTTTCAAAACCTTTTTGTAAAATACTCAAGTCTTTGACAGTTCTACTATATAATTTTCCTTTTAACATAAAGCTTTAGGCCC<br />CGGTCGAGAAGTGCTAGATACCTCCTTCTCATGTGAGGCGTACATGATACCAACTGTGGTTCCATATCACTCCGAATTCTAGAATACAACTCTGGCTTAT<br />GCAATAATGGCTTCCTTCTGCAAGGAATAGCTACTAAAGATAAATCCAGTATCCAATCAGAAAGTTTGGGATTACAGAGAAAGTCAGAATGACTGTATGA<br />TTAAGATTATGAGACGCAGGCTGCTAATGTATGAAGTTCAATTTCTAACAGAATTTGCTTGAAGGCCCACTTAAGAGCATGATT

Expression



Full and truncated open reading frames discovered in ENST00000502188

In silico ORF/peptide predictions
>peptide 1 (80 aa)
MSHQAWPCSTSKGGKERGKLFKSPNQTKLNQTTTRKKKHQPSKINKHRVDGSTNIFKTTDIQCKMYRMKSHNLNHQQSTS

>peptide 2 (72 aa)
MVNLGNFLQVTLLAQTCIKQSSLGFFDSNSKSDKNLSNEVLEKRVYDLSKPFCKILKSLTVLLYNFPFNIKL

>peptide 3 (69 aa)
MEKKKKKKKKEYYKKTETLFQCIIPCSSACEVLLSTTCAFCDTSVAMGSEHVASLVFEVSEIAPWLCQC


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT135197 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 3.0E-19)