Detailed information on ENST00000502747

lncRNA-RNA interactions

Number of interactions: 47

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000502747 644 266 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000502747 658 295 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000502747 533 251 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000502747 657 294 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000502747 578 300 noncoding Trans
ENST00000498535 makorin ring finger protein 1 nonsense mediated decay ENST00000502747 534 266 CDS Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000502747 523 273 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000502747 644 269 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000502747 570 296 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000502747 614 300 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000502747 668 303 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000502747 608 292 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000502747 608 292 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000502747 608 292 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000502747 629 265 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000502747 617 269 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000502747 510 263 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000502747 644 266 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000502747 644 266 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000502747 644 266 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000502747 647 299 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000502747 647 299 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000502747 523 273 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000502747 644 269 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000502747 665 265 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000502747 665 265 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000502747 637 271 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000502747 528 292 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000502747 640 300 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000502747 615 265 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000502747 619 299 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000502747 610 265 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000502747 610 265 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000502747 637 298 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000502747 658 295 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000502747 579 297 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000502747 648 294 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000502747 611 306 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000502747 606 301 UTR5 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000502747 631 269 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000502747 631 269 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000502747 601 265 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000502747 601 266 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000502747 608 314 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000502747 610 300 CDS_UTR Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000502747 657 294 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000502747 580 290 UTR3 Trans

Sequence

>TCONS_00251973 (2766 nt)
GGGTGACGAAATAATCTATATGACAAACCCCTGTGGCAATTTTCCCCTTACAACAAACCTGCACATACACCCCTAAACCTAAAATAAAAGTTAAAAATAA
ATGAATAAATAAATAAATAACCTTAAAGCCATTCTCCCAGTGAATGCTGAGCCCCATAGCCTTCCTCTTTAGCCAAGAGCAGTTCTTGTATTCTGTCCCC
AAAAGCTTTTTGATCATTGGCAGGTAAGAGCTTTTTGCCCTGTCATAGACTGTAGTATGTGATGACCTTGTAGAATCCAGAATACATCCCCTATGAAATC
TGGTTTACCACTTACTCCCCTCCCCAATTAAGCTATGTGGTTTTATCAACAACTATGGTAATTTTTTTTCTGATCTTGTGATTTAAGAACTAATGTTACA
AACCTCAGGGAGACTAGTTAGTGTGTTTTAAGTGTAGCCATAGGCTTGATAAAGTATTGGTAGATAACTTGGCAGAACCTGATGTCTTTGAAGTAGCAAT
GTTCAGTTCAGCGTGTAACTCTCTCCCCCTTAATATCTTTTTAGTTTTATCTGAGAAACATACTACATTTTTTTCTCTTTTCTTTCCTTTAAAGGTGGAT
GCTCAAGTTTGAGGACTGTCATGGGGACTATCAGGTTTTTTAGGCATGTGCTTTCTTTTTCTTCAAATTAAAACCTGTTGTCTGTCTCTTGTCACTTTTC
AGGACAGCCACACTCGGGGCTCTTACAATCAGGGGTCATAAGCTGCTATGTCACCTACCTCACCTTCTCAGCTCTGTCCAGCAAACCTGCAGAAGTAGTT
CTAGATGAACATGGGAAAAATGTTACAATCTGTGTGCCTGACTTTGGTCAAGACCTGTACAGAGATGAAAACTTGGTGACTATACTGGGGACCAGCCTCT
TAATCGGATGTATCTTGTATTCATGGTAAGTCTTGGGAGTTACTCAAGGTCACTTTTGCAGACTTTAAAATTACAGGAAAAGAATTGAAATAACTTTCAG
TAGCTGTGAGGCTGCAACCATTTGAGGAGGGGGGAAAATAACCACAAGTAAAAAGGCGAAGAGCGTGAACTCATATTTGAACTTCGTTCACCTTACTTGT
TTTTATTTGGGGTAAATAAAGCAAATATATGGTATGTAAATATTTGAACTTCGTTTACCTTACTTGTTTTTATTTGGGGTAAATAAAGCAAATATATGGC
ATGTTGCAGCACCGTTGCCTAACCCCCTTTAAAAGATGGTCGAATAGTAGTTTGCTATACCTTTACTGGAGGGCAGGGGAGCACAAAGTGAAGAAGAGAT
AGAATGTGCCAGCATGTCCTGGCAGCTTTCTGATCCAAAGGAAATAGCTTTCTTCTGCTGTTGATGGAAAGAGTACAGAGTGCTGTGTGCGTGGTCATTC
TGTGCAGACAAGAAATGTTCATTCTCTTTTCTGCTAAACCCACAATGCTGTTGTTCACTCGGCAAAGCAGCTCCTCCAAAAGTAGATGTGATATATGAGT
GGGCTGTGTTTCAGATGCTTGTGGTGGGGGTTATTCCACCTTTAAAAGGTTTAAAAGGTTGCTAGAGGGAGAAAAGTCAAGGATAGAAATGGCTAGTTAA
TCTGGATATATATTTCGCTGATAACTAAGCTTCCCTTTAACAGTAACCTTTTCACATTTAGCCTTTACTTCTGTGTTTACATTTTGTTAATGTTCAGTAT
AAAAATTCAATTCCATTGAATTCAGCCATAGGCACATTGTAAACTTCCTTTTTGCTGAAACGAAATACTCCTGGTGGTGATAGCTTGTATAAATATAATG
TCTTTCTGAGCATGTTGGCATTTTCTCTTACCTCCTTTAACAACTTCTACTATTAGAAAGGGACCAACGGGGACACAGACCTTTTAGAGTCTATTTGCTC
AGGGTCACACATCAAGCAATAAAATGCTTGTTGTTTTACAGGTAGGTGTTAAGATGATGGTGACATACATTCATTCTTGGCCTGTGTGACATAGTGACAG
AGTCTCCTTGTTGTTGCAGAATGGACTGTGGTAACTTCTTTCTGGCCTTTCAATTTTATTAATTCCTAAGTTGTTCGCAGAGTACCTACAATATAGGAAG
CAGGCTGCGTGGTGCAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAACCCAGGAATTTGAGACCAGCCTAGAC
AACATAGCAGACCCTGTTTCTACGAAAAAAAAAAAAAATCAGGCGTGATGGCACGTGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGATGGGAGGATCAC
TTGAACCCAGGTGTCTAAGGCTGCAGTGAGCTAGGGGTGTCTCCACTCCAGCCTAAGCAACCGAGTGAGACCCTGTCTTTTGAAAAACCAACCATGAAGA
TATTTGATAGAATAAAATCATGTTTTTGTGGGTTACTGGGTACCCAATGAAAAAAAATATTTGCCCTTGGCCAGGCGCGGTGGCTCACGCTTGTAATCCC
AGCACTTTGGGAGGCAAAGGTGGGTGGATCACCTGAGGTTAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATATCTACTAAAAATACAAAA
ATTAGCGGGGTGTGGTGGTATGCACCTGTAATCCCACCTACTCCGGAGGCTGAGGCTGGAGAATTGCTTGAACCCAGGAGGGGGAGGTTGCAGTGAGCTG
AGATCACGCCATTGCACTCCAGCCTGGGTAACGAGAGAAACTGTATTTCAAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.