Detailed information on ENST00000503814

lncRNA-RNA interactions

Number of interactions: 66

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000503814 586 280 UTR3 Trans
ENST00000375140 coiled-coil domain containing 153 retained intron ENST00000503814 530 280 noncoding Trans
ENST00000375290 patched 1 nonsense mediated decay ENST00000503814 608 292 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000503814 616 301 UTR3 Trans
ENST00000415318 coiled-coil domain containing 153 protein coding ENST00000503814 530 280 UTR5 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000503814 514 284 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000503814 528 288 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000503814 591 301 noncoding Trans
ENST00000512143 platelet-derived growth factor receptor, alpha polypeptide protein coding ENST00000503814 554 283 CDS_UTR Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000503814 501 282 CDS_UTR Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000503814 598 283 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000503814 615 300 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000503814 568 299 UTR3 Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000503814 917 595 noncoding Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000503814 626 281 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000503814 626 281 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000503814 626 281 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000503814 626 281 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000503814 634 287 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000503814 601 300 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000503814 610 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000503814 610 293 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000503814 615 300 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000503814 733 538 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000503814 603 280 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000503814 603 280 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000503814 510 282 UTR3 Cis
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000503814 553 300 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000503814 553 300 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding ENST00000503814 553 300 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000503814 503 301 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000503814 864 617 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000503814 864 617 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000503814 674 298 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000503814 674 298 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000503814 587 294 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000503814 923 593 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000503814 615 288 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 591 306 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 527 300 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 591 306 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 527 300 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 591 306 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 527 300 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 591 306 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 527 300 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 591 306 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000503814 527 300 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000503814 610 300 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000503814 621 301 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000503814 621 301 UTR3 Trans
TCONS_00152102 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000503814 629 300 UTR5 Trans
TCONS_00152103 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000503814 629 300 UTR5 Trans
TCONS_00152105 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000503814 629 300 UTR5 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000503814 629 300 UTR5 Trans
TCONS_00152126 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000503814 629 300 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000503814 586 280 UTR3 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding ENST00000503814 507 288 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding ENST00000503814 507 288 UTR3 Trans
TCONS_00192137 amyloid beta (A4) precursor protein-binding, family B, member 2 novel protein coding ENST00000503814 588 300 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000503814 616 301 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000503814 675 299 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000503814 675 299 UTR5 Trans
TCONS_00243503 proprotein convertase subtilisin/kexin type 5 novel protein coding ENST00000503814 528 306 UTR3 Trans
TCONS_00243507 proprotein convertase subtilisin/kexin type 5 novel protein coding ENST00000503814 528 306 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000503814 557 299 UTR3 Trans

Sequence

>TCONS_00251977 (5316 nt)
CTCCTGCCTCAGCCTCCTGAGTAACTAGGACTACAGGCAGGTAGCTGGGACTACATACGTGTACCAGCACACCCAGCTATTTTTTAAAAAAACTTTGTAG
AATTTTGAATGAGCCACAGTGCCTGGCTGAGGATGGTTTCGAGTTAAAAGTTTTCACGCTGTTACAATTTATAGTTTCACAAGAATGTTTAAACATCAGA
TAAGTTTGATCATAAGACTGTTTCCTAGTATTTATTTTATAACGCTCTAGAATTTCTCCAAATATATTAGAGGGTGGCATAGCAGTCTAAAAAAATATTA
ATTTTTTTATTTTTTTAATGCCATAGAACATTTTTGCTCAAATCAAATAATGATGGTATTGCAATTCTGCAAATGTTTGGAGTTACTGGCCTAAAGGTAA
GGGGAGCAAGATTAGTTGATAAGTTGAATGAATAGACAGGGCAGAGCCAGTATACCTTTGGTGAACTAGTAAGTTTATTTGCGTGGGACATTTTTTTTCT
CTTTGCAGTACTGGCATAGCTGGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACTTGAGCCCAGGAGTTAGAG
ACCAGCCTGGGCAACATGATGAAACCCCATCTCTACAAAAAGTAGAAAAATTAGCCAGGTGTGGTGGTGCACACCTGTAGTCTAAGCTACTTGGGAGGCT
GAGATAGGAGGATTGCTTGAGGCAGGGAGGTCAAGGCTGCAGTGAGCTGAGATCATGCTACTGCACTCCAGTCTGGGTGACAGGGCAAGATTCTGTCTCA
ACAAACAAACAAACAAACAAACTAGTACAGAATATTTCATTAAAATGTTTATGTCATTTGAATTATGTTAATTATACTTCCTAAATGGAATAATGGTATC
TTATTATTAAACCAGAATAATAAATATGAACTTGAATATATTTAAATGCTAGGCACCATTCTATGAAAATCTGTCTGCTTCATGTTTATTATTGAAATAA
TCTAAATTAATTTTAGAACACTTAAAATCGAAAACATCTCCAAAGTGTAGTTCTTCTCTTTCTAACAGTATGATAGTTCATTTGTTTAAGAAAACTATTC
CCATTATTTGGGTATTCAAACATGTTTTTACTTAGGAGCTCTTTTTGCATGGAATGTACTAGACTATGGTATTGGATGATAATGGAAAGAAGATAATCTC
CCCATTCGTAAAATCAGAAATTTATTTGATCAATAAAACTTCTTTTCTGGAACACAACTCCTTGGATGTGTGAGCCTATCAGACATTAGGAGAATAATTT
TAATAAGCTTTTGAATGGAAGATTTGATCACTATGATTAGAGACGGAGCAGTGGGAGATGATAGTGTCTTGGTGCTAGCACCAAGCTAGCACTAATAGAT
GATGGCACCTATTTATGACCCAAATTCTAAATTTCTTTTGGTATTTAGAGACATCTCCCAAATATGTATTTCCCCATAGTGATTATTCTAACTGACCTTT
AGCATTCTGTCTGTCCTAGACATCTGTATAAATGTTTTCATTCTGTTGAACTTAGTGGTTTGAATTCTAACTCCTGAGAAAATTTCCACATCTTTGCATT
TTGCTTCAGGCTTCTTTTCCCCATAGTGTAATGGGGAACAAGAGGTGTTTGGTTACATGAGTAGGTTCTTTAGTGGTTATTTGTAAGATTTTGGTGCACC
CATCACCCAAGCAGTATACACTGCATCCTATTTGTAGTCTTTTATCCCTCACTCCCTTCCCACCCTTTCCCCCTGAGTCTCCAGAGTTGAGTCATTCTTA
TGCCTTTGGATCCTCATAGCTTAGCTCCCACTTATGAGTGAGAACATATGATGTTTGGTTTTGCGTCAGCCTTTTAATTTTTTTTTTTTTTTTTTTGAGA
CGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTTAAGCAGTTCTCTTGCTCAGCCTC
CCAAGTAGCTGGGATTACAGGCGCCTGCCACCATGCCTAGCTAATTTTTGTATTTTGAGTAGAGATGGCTTTTCACCATCTTGGCCATGGTGGTCTTGAA
CTGCTGACCTTGTGATCCACCTGCCTTGGCCTCCCTAAGGACTAGGATTACAGGTGTGAACCACCATGCCTGGCCTTTTTTTTTTTTTTGAGACAGAGTC
TCACTCTTTGCTCAGGCTGTAGTGCTGCGGCGTCATCTTGGCTCACAGCAACCTCCACTTCATAAGGTTCAAGTGATTCTCGTGCCTCAGCCTCCCAAGT
AGCTGGGACTACAGGCGCATACCACCACACCTGGCTAATTTTTTTATTTTTAATAGAGATGAGGTTTTGCCATTTTGGCCAGGGTGGTCTTGAATTCCTG
ACCTCTGGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCTACCACACCCAGCCTTGTGACAGTGATTCTTATCTCATAGTGC
AAAAGATGGCATTTGGATGGGAGATAATAGTTCAGAAAAGTTCCATTCTACAGCAACTCACAATTTGAGGACCATAGTTCTAAGAAATATCCACAAAGTC
AGTTGAACTATGATTTTTAGCTACTTGGCATATAAAGTTTTGCTGGTAAGTAATGACTTAAATCCATAACTTTTCAAAAACATAAGCCTTACTTCAAAAG
CATTATTTGTACATTGTAGAAAATTAGAAAATACAGATAATCATCTGCGGTAACTTTCCCAAAAAAGAGAAAATACAGATAAAATATTAAATGAAAATAT
TCTTACCACCTACAGGCGACCAATTTTAATATCTCCATAAGTCTTCCCCAGCTCTATCTTTTGACTTAAATAGGATCATATTTAACTATTGTCTTGTAAC
TTGCCATTTTCATTTAATAACCTCCATCCTTCCGTGTCAAAATAATTTTTCACCTCTTCTCTTACTTAGTCTATATTCAGATGTAAATTGTTCATCTCTT
ATATTTCCCATAAGTGAAAGTTAGTCCTAGACTTGAAGCCTTTATTAGCTGTAAGTTCAGCAAAATGCCTTTCAGAGCCAGTTTGTCAAAGCCAGCATCC
AGTCTGGAGAATGCACCTGGCATATGGTTGTGTCCTTTAATTCCCTTTCAATCTAGTGGAGTTCTTTTTTTCATGATACTGACTGAAGAGATTGCACAGT
TTTGGTTTTAAGTACAGAGACGTAGTACATTTCTTAATAATAAATGTTTAACTTTTGTGTGTTTTAACCTAATTTGTTTTTTTATTTTTAAATTTATATT
TTATTTCAGCAAAACAAGCTATCGATCAGGGAAGATCTCCAGTTATAATAGATAACACTAATATACAAGCTTGGGAAATGAAGCCATATGTGGAAGTGGT
AAATATGAAACATGAGAAAGTTTTTATTTTTTATTCTTGTCAATTTTTTCACATTCTAAAATTTTGGCTGGTTGGATCTTGATTATTAAAACATTTGTCC
TTTGTTTTCTAAAGAGGTTTGTTGGTTTGCTTAGTTTTTAAAAAAATTGTGAATGATGTTTTTTAAGGAACATGTTCATCTTGTTAATTTTTGTTTGTTT
TTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACTGCAAGCTCCGCCTCCCCAGTTGAAGCGATTCTCCTGC
CTCAGCCACCTGAGTAGCTGAGATTATAGGTGCCTGCCCCCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCT
GGTCTCGAACTCCTGAGCTCAGCCCATCTGCCGTGCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCTCATATTGTTTTGA
CTTTCCTTAAGGATAGTAATCTTAAGGAATTACTATTCCTTGAGAATAGTAATCAAAATTTATCCGGTTAAATAGTCTTAACTGTTATAAACCATATTAT
TTTATAAAGCGTCATTTTTCTTGGTCGAGCAAGTGTATAGTATTGTCGAAATGAAATTTAACTGTCTGCCTTCTTTTTACTTTAAGAAGTACTTCTCTGG
GTTTTTGTTTTCTTCCTTTCCTTTGTGTAGGCCATAGGAAAAGGATACAGAGTAGAGTTTCATGAACCTGAAACTTGGTGGAAATTTGATCCTGAAGAAT
TAGAAAAGAGGAATAAACATGGTGTGTCTCGAAAGAAGATTGCTCAGATGTTGGATCGTTATGAATATCAAATGTCCATTTCTATTGTAATGAATTCAGT
GGAACCATCACACAAAAGCACACAAAGACCTCCTCCTCCACAGGGGAGACAGAGGTGGGGAGGCTCTCTTGGCTCACATAATCGTGTCTGTGTCACAAAT
AATCATTAAATTAGCTATTTTCAGCTAACACATTTGTTGTTGCACTTGAAAAAGAGTTAGTGAGCCTGTCTTGGAGTTTAAGTAGTTTCAAATAAAAAAA
GGCTACAGTGCCTCACAAAGGATGTTCCCAGCAAGTTGTTTAAATTCCCAGCAAGTTGTTAAAGTGTAAATAAAAATATATGAAATTGTATTTTAAATGT
TTTTATATTCTCTTGTTGTAATACTCTTGGCTGTTATGGAAGCACCTGAGTAATAGAGTGGTGGGTAGGAGCTAGGATGTTTTTCTACAATCGAATTTTA
AACTAATTTATCTATTTTATAGACACTATTGAACAGTTTTTTAATAGTTCATATCTAAATCTAACTTTTCATAAAACTTTACGGTTTTTCCTTCACTACC
TTAAATATGCAAGAAATACTGACTTGGTATAGGGTACCTTAGTTTTCTCTATTCATTAGACAGGTAAAATTATATTTCAGCTGATTGATCTGTGTGACAA
AATTATTTCTTAGCTATAATCAGCACATCACTTAGTTCAAACAAAATTCCCCAGCAAATGTTAGATAGTAGGTATATCAGTCACCTGGGGAGTTTTCTTC
ATAATATGCATATTCATCTTGTAATGCATACATAGTTATCATCCTCCTTCTCAACCCATCTCCCTAACCCCACATGCTTGCCAGTTCTTGAAGGGATAAA
GTGATTCTAATAATGTTTTACTTCTCTCTGTTCAATTTAATGTGATATAATTCTAGTATAAAAATATTTTGGACAGTTGCTTAACATGGTCATAAGAGGA
TTTGTACTATAGAATATCTTCTAGTACTAATTTTTCTGTAGAGCAAATTATATTTCTCTCACTGGATAGTTTTTAGATGTGTTTCTTCATATAAAATTAA
AAACTGAGATGGAATTC

Expression



Full and truncated open reading frames discovered in TCONS_00251977

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.