Detailed information on ENST00000504000

lncRNA-RNA interactions

Number of interactions: 59

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000504000 559 295 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000504000 559 295 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000504000 620 290 noncoding Trans
ENST00000513269 NEDD4 binding protein 2 protein coding ENST00000504000 575 293 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000504000 619 299 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000504000 607 299 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000504000 607 299 UTR5 Trans
TCONS_00002817 lincRNA novel protein coding ENST00000504000 625 298 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000504000 652 297 UTR3 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding ENST00000504000 601 301 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000504000 601 301 UTR5 Trans
TCONS_00025775 zinc finger, MIZ-type containing 1 novel protein coding ENST00000504000 601 301 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000504000 636 289 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000504000 657 298 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000504000 657 298 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000504000 547 294 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000504000 567 304 UTR3 Trans
TCONS_00047135 ubiquitin specific peptidase 28 novel protein coding ENST00000504000 604 298 UTR5 Trans
TCONS_00053503 anoctamin 4 novel protein coding ENST00000504000 600 300 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000504000 600 300 UTR5 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000504000 636 300 UTR5 Trans
TCONS_00061864 transmembrane protein 116 novel protein coding ENST00000504000 615 299 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000504000 605 293 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000504000 521 317 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000504000 521 317 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000504000 588 260 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000504000 638 297 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000504000 638 297 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000504000 638 297 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000504000 638 297 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000504000 562 299 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000504000 606 300 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000504000 606 300 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000504000 632 302 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000504000 522 294 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding ENST00000504000 589 307 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000504000 634 302 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000504000 602 301 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000504000 602 301 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000504000 623 303 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000504000 535 297 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000504000 535 297 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000504000 641 300 UTR3 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding ENST00000504000 530 293 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding ENST00000504000 530 293 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000504000 607 298 noncoding Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding ENST00000504000 613 298 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding ENST00000504000 613 298 UTR3 Trans
TCONS_00192159 amyloid beta (A4) precursor protein-binding, family B, member 2 novel protein coding ENST00000504000 503 238 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000504000 547 294 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000504000 612 296 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000504000 602 297 UTR5 Trans
TCONS_00211226 antisense novel protein coding ENST00000504000 601 297 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000504000 623 292 noncoding Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000504000 603 299 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000504000 613 293 UTR3 Trans
TCONS_00243136 glioblastoma down-regulated RNA novel protein coding ENST00000504000 572 293 UTR3 Trans
TCONS_00247616 unprocessed_pseudogene novel protein coding ENST00000504000 572 293 UTR3 Trans
TCONS_00247617 unprocessed_pseudogene novel protein coding ENST00000504000 572 293 UTR3 Trans

Sequence

>TCONS_00247617 (1898 nt)
CTAAAGGCACTTGGCACTGGCTTCGGCATCATCCCTGTGGGCGGCACTTACCTCATTCAGTCTGTTCCAGCTGAGCTCAATATGGATCACACCGTGGTGC
TGCAGCTGGCAGAGGTACTGGTGCACCTTCGAGTGTGTGTGTGTGCAAGGGACAGTCTGTGAGGCAAGTCTGGAGCAGTTCTCAGCTCGTGCTCCCCATT
ATGCAGGTCTTTTGCTGAGACTATCCAGTGGATGAACTACTCAGGCCTGTGCTTGTTCAGCAGACATTTATTGAGCAGCTACAGTGCAAAGCACTGGGCC
AGGCTGTGGGGCATATAAAGATGATAAAATTCCTGCTCTCAAGGAGCTTACAGTCTAGTCAGGTAGACAGACATGCAGACAACTAACTAGATTTCTTTGG
GTAGCCAGACTCTTTGATGTCTTTTGAAACTACTTTATGGATTCTTCAAAAACAGATTTTAAAAAATCTTGTTTGCCATGCCCCCATCCCTCATCATGCC
TTAAGCATATGCCATCTTCCCCCAAATCCCCATCAGGTATTTAGATGTGTTCAGTTTTATTATTTTTGAGATGGAGTTTCACTCGTTGCCTAGGCCAGAG
TGCAATGGCGTGATCTCAGCTCACTACAATGTCAGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTGCC
ACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGCCAGGCCTGAGTTTGGTCTCGAACTCCCGACCTCAGGTGATCCACC
CACCTTAGCCTCTCTAAGTGCTGGGATTACAGGGGTGAGCCACCGCACCCGGCCCAGTTTCCTTTATGACGTAAAACAGAACTAAATAAGGGAGGGGCTT
TTCTGTATTGGAGGATGAGTAGAATGAGGCAGGGCAAGGGCTGAATATTTAAATAATGGAGGTTATTAGCAGTTTATGATTATCATCATTTCTTCCCATC
AATTAATTGTCCAGAATCTTCCCTTGTCATGCTCTAGAGTGCTTTGCAGAAGTCTAACTCAGTATGTTAGTACAAGGGACCCCACTTTTTTGTTTTTTGA
GATGGAGTCTCGCTCTGTCACCCAGGCTGGTGTGCAGTGGTGCAATCTCCGGCTCACTGCAGCCTCCATCTCCCAGGTTCCAGTGATTCTTCTGCCTCAG
CCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCT
CGAACTCCTGACGTCAGGTGATCCACCCACCTCGGCCTCCCAAAAAGTGCTAGGATTACAGGCATGAGCTGCCGTGCCTGGCCGGTACCCCAGTTTTAGG
ATTGAACCCACCAACCTACCTCTGTCATGCTGAAAGTCACTTCTCTCTCTCCCCGCTGGAACCTTTAAACATTTTCTGTGTTCTCTCATGCTTGACAGCT
TTTCCTCCTGTCTGGGTAAGTCTCTTGTTCCTGGGCAGATCCTGGGTTCTAAGGGAAGGTGCACTCTTAACTGATTCAATCCCCATTCCTCCTTCCTTCA
GAAGAATGGCTACGTGACTGTCAGTGAGATCAAAGCCAGTCTTAAATGGGAGACCGAGCGAGCGCGGCAAGTGCTGGAACACCTGCTGAAGGAAGGGTTG
GCGTGGCTGGACTTACAGGCCCCAGGGGAGGCCCACTACTGGCTGCCAGCTCTCTTCACTGACCTCTACTCCCAGGAGATTACAGCTGAGGAGGCCAGAG
AAGCCCTCCCCTGACTGCATGTGGAAGGGCACACAGCAGCAGGCAGGGAGGAGGCGGAGGTGGCAAATAAACCTGGGCAATTTTGTTTATACAAAAAAT

Expression



Full and truncated open reading frames discovered in TCONS_00247617

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.