Detailed information on ENST00000504241

lncRNA-RNA interactions

Number of interactions: 72

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000504241 652 301 UTR3 Trans
ENST00000307792 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein coding ENST00000504241 578 296 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000504241 675 300 UTR3 Trans
ENST00000336787 RAB27A, member RAS oncogene family protein coding ENST00000504241 689 304 UTR3 Trans
ENST00000353047 cathepsin B protein coding ENST00000504241 624 588 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000504241 612 300 UTR3 Trans
ENST00000396307 RAB27A, member RAS oncogene family protein coding ENST00000504241 689 304 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000504241 653 294 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000504241 524 302 noncoding Trans
ENST00000524750 CD82 molecule protein coding ENST00000504241 510 236 UTR3 Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000504241 702 302 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000504241 701 301 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000504241 657 318 UTR5 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000504241 640 290 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000504241 502 261 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000504241 502 261 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000504241 632 295 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000504241 788 590 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000504241 652 301 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000504241 652 301 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000504241 610 300 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000504241 604 295 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000504241 637 299 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000504241 657 301 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000504241 636 298 noncoding Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000504241 689 304 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000504241 605 300 UTR5 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000504241 681 643 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000504241 681 643 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000504241 667 300 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000504241 667 300 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000504241 727 629 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000504241 577 308 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000504241 576 283 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000504241 645 296 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000504241 640 301 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000504241 640 306 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000504241 640 306 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000504241 640 306 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000504241 607 294 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000504241 607 294 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000504241 607 294 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000504241 611 306 UTR5 Trans
TCONS_00182611 processed_transcript novel protein coding ENST00000504241 609 293 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding ENST00000504241 609 293 UTR3 Trans
TCONS_00182614 processed_transcript novel protein coding ENST00000504241 609 293 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000504241 648 293 UTR3 Trans
TCONS_00193753 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide novel protein coding ENST00000504241 568 321 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000504241 637 293 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000504241 637 293 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000504241 653 302 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000504241 655 287 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000504241 653 302 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000504241 641 295 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000504241 625 302 UTR5 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000504241 691 577 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000504241 691 577 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000504241 691 577 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000504241 615 303 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000504241 656 302 UTR3 Trans
TCONS_00237101 cathepsin B novel protein coding ENST00000504241 624 588 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000504241 624 588 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000504241 635 302 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000504241 618 285 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000504241 618 285 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000504241 602 280 UTR3 Trans

Sequence

>TCONS_00253752 (4356 nt)
GAAGAATAAAGTCTGGAATGTTTCTCTCAAGACCTTTGTCTTAAAAGGGATGCTGAAGAAGTTCAAAGAGGACCTTCGGGGAGAGCTGGAGAAAGAGGAG
AAAGGTAGGGATGGTGCTGTGATGGCGAGTATGGACTGTCTGCCACACAGAGATCCTACTCCCTGCTCGTGACCATCTCAGGGTTTTGCATATGGTCGGT
TCCTTCAGCCCACCCACCTCAGCAACCCTGTTCCTCTGTCCCCTCCCCCACACCACCCCCTCCCCATCCTGGGAGCTCTGACACCCTCAGATGTTGGCCC
AAATGCTGCAGGTTGGTTAGGAGCAGGAATGCCCTGTACCTCGAGATACTCAGACTGGGAAAGGCTTCTCGGCCACCTGGGTGAGCCTCTACCCGGTCCC
CACTCCAAGATGGATGGAAACCTCTCCTGGGAATGGGGTGTATACAGGGGACCAGGAAAGCAAGGGGAAGCTAAAGACTGGAAGGAATATCGTTTTTACT
CTTGCAAAGCTCTGGAATGTGTGGCATCCAACACCCAGAGGAGGGGAGGGGAGGGCACATATTCCTGATGCTGATGTCTGAGCTAAGTCAGAGTGTGTCT
GGGTGCCACCTAAAACACCTGAGTGAGACCAGGCCCTCCTCTGCTCAGAGCCCTGCCACAGCCCCTCTGACTTGGTAAAGGTCAGAGTCCCCATGGAGGT
CTCAAGGGCCCACGGGCTCTAGCCTCACTGCACACCCCTTCTACTCCACGCAGCTACACATCCTCCCTGCTGTTCCTTCAGTGTACCAAGCACACACCCA
TCCCGGGGCCTTTGCACTGCCAGGCTCCCCCACCCCAGGCCCCTACCTGGAGCATGCTTTCCCCAGCCAGTCCTGTGGCCTGCTTCTTTGCCTTCTTTAT
ATCTGTCTGCTCGATGCCCCTTTTCAGTGAGGGTCTTCCCTGGCCACTCTGGTTGAAGTTACAGCCTGCTCTTCTGGTCCCTCTCATCTTCTGTTTATAA
TCTATCCTCAATCCTCTCCCTGTGGGAAGGAAGCTGCAGGCAGGCAGGACTACTCTGATACTCTGTGGTACCCCCAGGGCCTCAATCGTAGTAGTGCTCA
CAGTAAGTGTACATATTTTAACTTTTTTTTTTTTTTTTGGAGACAAGGTATCGCTTTGTTGCCCAGGGTGGAGTGCAGTGGAACTGCAGCCTCCACCCCG
CAAGCTCAAGCGATCCTCTCTCCTGGGCGTCCTCGAGTAGCTGGGACTACAGGAGCACACTACCATGCCTGGCTAAATTTTCTATGTTTTGTGGAGACGG
ATGTCTCGCTATATTGCCCAGGCTGGTCTCCAACACCTGGGCTCAAGCTGTCTTCCCACCTCTGCTTCCCAAAGTGCTAGGATTACAAGCATGAGCCTCT
ACACCTGGCCTTAACTTTTTATTATGAAAAATTTCAAACATACTCAAAAGTAGAGAGAAGAGTGTAAAGAATGTTACATACCCATCTCTCACCGTCCGCA
GTGATCAATTAGTGGCCACAGTTTTCATAGACACTGCTATCCACTTCCTGTGGGATTATTTTGTTTTCTGAGACAGGGTCTTACTCTGGAGTGAGATCAT
GGAGTACAGTGGCCTGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCATGCCTCAGCCTCCCAAACAGCTGGAATTACAGGCACA
GGACACCATGCCGGGCTAATTTTTGTATTTTTAGTAGAGAAAATACAAAACAAGTTTTCCGCCATGTTGCCCAAGCTGGTCCCAAACTTCTGACCTCATG
TGACCCATTGGCCTTGGCCTCCCAAAGTGCTGGTATCGCAGCTGTGCACCATCTCACCCGGCCTCCACTGTATTATTGTTATTATTATTTTTATTTTTGA
GACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAATCTCCACCTCCCGGGTTCATGCCATTCTCCTGCCTCAGC
CTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTATTTTATTTTTTTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAG
GATGTTCTTGATTTCCCGACCTCGTGATCCACACACCTTGGCCTCCCAAAGTGCTGGAATTACTGGCGTGAGCCACTGCGCCTGGCCTACTGTATTATTT
TAAAGCATCAGAGACAACATATCATTGCCATAAATACCTCAGTGTGTTATCTCTAAAGAAACAGACTTTGTAAAACATAACCACAAAGCAGTCCTCACAC
CTGGACAGATTAATGATTCTTTCCAATGTCTAGCATTCAAATATCCCCATCTGTTGAATTGGGGTTCAAACCAGGCCCACACATTGCATTTGTTTGATTT
CAGTAAGTACTTGTTGAGTGGTCGGGGCGGGGGGAAGCAAAATCTCTGGGAGGCAGAGCGTGGGGGTTGGTTGGGCCTTGGCGCTGGGTGCTGGGGGGAT
TCTAGAGGGAAAGGCAGGCAGGTTGCAAAGCAAGGTCGGGCGCGGCCCTGCAAAGACTGTGCCAGGGGCCTGGCTGCGTGGGGACATTTCTCCCTGTCTC
TGTCTGCAGTGGAGCTCACCTTGGATCCCGACACGGCCAACCCGCGCCTCATCCTCTCTCTGGATCTTAAGGGCGTGCGCCTCGGCGAGCGGGCCCAGGA
CCTGCCCAACCACCCCTGCCGCTTCGACACCAACACCCGCGTCCTGGCGTCCTGCGGCTTCTCCTCGGGCCGGCATCACTGGGAGGTGGAGGTGGGCTCT
AAGGACGGCTGGGCCTTTGGCGTGGCCCGCGAGAGCGTGCGCCGAAAGGGCCTGACGCCCTTCACTCCCGAGGAGGGCGTCTGGGCCCTGCAGCTCAACG
GCGGCCAGTACTGGGCCGTGACCAGCCCCGAGCGGTCGCCCCTCAGCTGCGGGCACCTGTCGCGCGTGCGGGTGGCCCTGGACCTGGAGGTGGGAGCCGT
GTCCTTCTACGCTGTGGAGGACATGCGCCACCTCTACACCTTCCGCGTCAACTTCCAGGAGCGCGTGTTCCCGCTTTTCTCTGTTTGCTCCACGGGCACC
TACTTGCGAATCTGGCCTTGAGGGGCACTGCTGGGGAGCTCCTGTCTCTGGGCTGCCGGTGGGAGGGGATGTCGCCTCCCCAGAGATGCCTGGTCCGTCT
TGGGTCTGCCCTCCGTGCTCCTGACCCCTGCTGCCCAAGAGAGCCTGCTACAGACACAACCCCGAGGCAGGAGAGTGACTGTGGCCAACCGAGCAGGGGA
ACAGGGGCTTTGGACTCCTGAGGGTGTTCCCTTCCTGAGGTCACATGTGGATTTGGCCAGAGCCTTCAGGAGGTGGAGGCCGGTGAGGTCAGGAGCCCAG
CTCTCCAGGGGGCTTCTGCCCTGACTGGGAAGGGTGCCTGGCTCCCTAAAACAATGTCAAAGCCAGTCCTGCTGTTCTCTGTTGCCAGGGGGCAGGTCTG
GGCCTGGGCCAACCACGTTTGTTATCATGGCTGCTGCCTTCTGGACAGCTGCCAGCTCTGCCTTGAGAGGTTGTGGGACCTCTGGATCCAGCTGACCTGA
CAGGTCATCTACTCAGGGAGGAGCCCTGTGCTCCCAGCTCAGAGGACAGTCTGGGCCAGAACTGGAAGGAGACATCTGTCCCGTCTTTGAGTGACAAGCC
CGGGACAACAGCCAGTGGGCATCACGGCTCTCCAGCACTCCTTAGCCGGAGGATACAGAGTGATGGGTGCATCCTGACCAATGCGACAACCAACACGTGC
TCTCACAAACCCCTGACTCCCGCACTTTCCAGTGCCAAAGTACAAACGCTGCTTGGATAAGGAGAGCAAAGCTTCTGGAACTTTATTTACTCTTTCTTTT
TAATTTTCTTTTAAGAGACTGGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCTCCAGTTTCCATCTCCCTAAGAGCTGG
GATTACAGGTGTGAGCCGCTGTACCCGAACTTTTTTTGTTTTTGCTTCTGGAACTTTGAAACACAAAACACAAGTTGGCACTTACAATTTTAAAGATGCA
GCCAGCTCTAAACAACACACAGAGCACAAATATGCTCCTGACGGACTCAGGAAAATGCCAACAGCAGAGCACCCTGGTGCCAAGGCCTTCTCAGCCCATG
CCCTGGAGGGCATTCCCCTGGCCAGCCTCAGCCCCTTGTCTACTTGTTCTCCAGCTTCTGGGTAGCTGGGCTTCTGGAAGGGTGGCAGTGGGCTACTCCC
TGCTCAGCGCTCCCCTGGGAAGGGGGTGAGGAGATGAAAATGAAACTATGAGCTGTC

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.