Detailed information on ENST00000505343

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000505343 559 297 CDS_UTR Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000505343 614 296 noncoding Trans

Sequence

>TCONS_00221037 (1201 nt)
GGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGAGTAGCCTGGCCAACATGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGACATGGTGGTGGGCACCTGTAATCTCAGCTACTCAAGGAGGCTGAGGCAGGAGAATTGCTTG
AACCCAGGAGGCGGAGGTTGCATTGAGCCAAGATCACGCCACTGCACTCCAGCCTGAATGACTGAGTGAAACTCTGTCTTAGAAAAAAAAAAAAAGTAGT
CTAATCCAACTTCTTATTTTGCAGCTGAAAAAACTGAGGGTCAGCAAATTTAAATAAAATCTGAAATGAAAACTTATGTTTCGTGACTCACAATCCAATG
TGATCTCTGCTAGGTATTCTGATTCTATCTTTGCTTGACTGATACAAGATAATGATGAAATGTATAACAATGTATTAATACTGATACATTGACAGACAAG
CCAGGCTGATTGTTGAAATTTAAATTTACAGTAATAAAATATTAATGCAGAGATTTCCCTTTTCTTAAAGATGAATCCAATAAAGAAACAGCTAACCTAC
AAGAAAGAAGTATAAGCAATGATGATGGTGAAGAAAAAATAGTAACAAGTGTGCGTCGGAGAGGAAGAAAACCCAAACGTTCTCTCACTGTATCAGATGA
TGCTGAATCCTCAGAGCCAGAAAGAAAACGCCAGAAATCAGTTTCTGATCCAGTGGAGGACAAGAAAGAGCAGGAGTCTGATGAGGAAGAGGAAGAAGAG
GAAGAGGACGAGCCTTCAGGAGCCACCACAAGATCCACCACCAGATCAGAGGCTCAGAGATCAAAGACACAGCTCTCCCCTTCTATCAAGCGCAAGAGAG
AAGTCAGCCCTCCTGGGGCCCGAACAAGAGGCCAGCAAAGGGTGGAGGAAGCCCCTGTGAAAAAAGCGAAGCGATAATCCTGACCACTGCTGCCCTAGGC
TTATGGAGGAACACGGTGGAGAGGAAAGAGACATGCCTTGGTGGCCATAGGCTTCTCTTTAACCAGGAAAAAGATATGCATGTGCTGTAAGTCCCTAGGT
GCAAGCTTTTTCTTGTTATGTTTTAAACAGCTTTATAAACTATTGTTCATAGAAGATATTATGTACATTTATTTCAGATAAAGGACAATAAGTTTACTTT
GT

Expression



Full and truncated open reading frames discovered in TCONS_00221037

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.