Detailed information on ENST00000505343

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000505343 559 297 CDS_UTR Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000505343 614 296 noncoding Trans

Sequence

>ENST00000505343 (1202 nt)
GGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGAGTAGCCTGGCCAACATGGTG<br />AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGACATGGTGGTGGGCACCTGTAATCTCAGCTACTCAAGGAGGCTGAGGCAGGAGAATTGCTTG<br />AACCCAGGAGGCGGAGGTTGCATTGAGCCAAGATCACGCCACTGCACTCCAGCCTGAATGACTGAGTGAAACTCTGTCTTAGAAAAAAAAAAAAAGTAGT<br />CTAATCCAACTTCTTATTTTGCAGCTGAAAAAACTGAGGGTCAGCAAATTTAAATAAAATCTGAAATGAAAACTTATGTTTCGTGACTCACAATCCAATG<br />TGATCTCTGCTAGGTATTCTGATTCTATCTTTGCTTGACTGATACAAGATAATGATGAAATGTATAACAATGTATTAATACTGATACATTGACAGACAAG<br />CCAGGCTGATTGTTGAAATTTAAATTTACAGTAATAAAATATTAATGCAGAGATTTCCCTTTTCTTAAAGATGAATCCAATAAAGAAACAGCTAACCTAC<br />AAGAAAGAAGTATAAGCAATGATGATGGTGAAGAAAAAATAGTAACAAGTGTGCGTCGGAGAGGAAGAAAACCCAAACGTTCTCTCACTGTATCAGATGA<br />TGCTGAATCCTCAGAGCCAGAAAGAAAACGCCAGAAATCAGTTTCTGATCCAGTGGAGGACAAGAAAGAGCAGGAGTCTGATGAGGAAGAGGAAGAAGAG<br />GAAGAGGACGAGCCTTCAGGAGCCACCACAAGATCCACCACCAGATCAGAGGCTCAGAGATCAAAGACACAGCTCTCCCCTTCTATCAAGCGCAAGAGAG<br />AAGTCAGCCCTCCTGGGGCCCGAACAAGAGGCCAGCAAAGGGTGGAGGAAGCCCCTGTGAAAAAAGCGAAGCGATAATCCTGACCACTGCTGCCCTAGGC<br />TTATGGAGGAACACGGTGGAGAGGAAAGAGACATGCCTTGGTGGCCATAGGCTTCTCTTTAACCAGGAAAAAGATATGCATGTGCTGTAAGTCCCTAGGT<br />GCAAGCTTTTTCTTGTTATGTTTTAAACAGCTTTATAAACTATTGTTCATAGAAGATATTATGTACATTTATTTCAGATAAAGGACAATAAGTTTACTTT<br />GT

Expression



Full and truncated open reading frames discovered in ENST00000505343

In silico ORF/peptide predictions
>peptide 1 (87 aa)
MMLNPQSQKENARNQFLIQWRTRKSRSLMRKRKKRKRTSLQEPPQDPPPDQRLRDQRHSSPLLSSAREKSALLGPEQEASKGWRKPL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT072590 (Evalue: 6.0E-83)

Best hit to Swiss-Prot:
sp|Q8NFC6|BD1L1_HUMAN (Evalue: 5.0E-60)