Detailed information on ENST00000506123

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000506123 548 283 UTR3 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000506123 509 285 UTR5 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000506123 519 293 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000506123 504 283 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000506123 643 286 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000506123 606 277 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000506123 548 283 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000506123 540 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000506123 540 272 UTR3 Trans

Sequence

>TCONS_00168220 (3421 nt)
AGACTTCCCTCTAGAATCCTCCAACATGGAGCCTCTTGCAGCTTACCCGCTAAAATGTTCCGGGCCCAGAGCAAAGCTTTTATGCCTTTGAAGTGAAGGA
TGCAAAAGGAAGAACTGTTTCTCTGGAAAAGTATAAAGGCAAAGTTTCACTAGTTGTAAACGTGGCCAGTGACTGCCAACTCACAGACAGAAATTACTTA
GGGCTGAAGGAACTGCACAAAGAGTTTGGACCATCCCACTTCAGCGTGTTGGCTTTTCCCTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCAAGCAAGG
AAGTAGAATCTTTTGCAAGAAAAAACTACGGAGTAACTTTCCCCATCTTCCACAAGATTAAGATTCTAGGATCTGAAGGAGAACCTGCATTTAGATTTCT
TGTTGATTCTTCAAAGAAGGAACCAAGGTGGAATTTTTGGAAGTATCTTGTCAACCCTGAGGGTCAAGTTGTGAAGTTCTGGAAGCCAGAGGAGCCCATT
GAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGACAAGTGATCATAAAAAAGAAAGAGGATCTATGAGAATGCCATTGCGTTTCTAATAGAACAGAGA
AATGTCTCCATGAGGGTTTGGTCTCATTTTAAACATTTTTTTTTTGGAGACAGTGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTAGTGCGTTCTCAGC
TCATTGCAACCTCTGCCTTTTTAAACATGCTATTAAATGTGGCAATGAAGGATTTTTTTTTAATGTTATCTTGCTATTAAGTGGTAATGAATGTTCCCAG
GATGAGGATGTTACCCAAAGCAAAAATCAAGAGTAGCCAAAGAATCAACATGAAATATATTAACTACTTCCTCTGACCATACTAAAGAATTCAGAATACA
CAGTGACCAATGTGCCTCAATATCTTATTGTTCAACTTGACATTTTCTAGGACTGTACTTGATGAAAATGCCAACACACTAGACCACTCTTTGGATTCAA
GAGCACTGTGTATGACTGAAATTTCTGGAATAACTGTAAATGGTTATGTTAATGGAATAAAACACAAATGTTGAAAAATGTAAAATATATATACATAGAT
TCAAATCCTTATATATGTATGCTTGTTTTGTGTACAGGATTTTGTTTTTTCTTTTTAAGTACAGGTTCCTAGTGTTTTACTATAACTGTCACTATGTATG
TAACTGACATATATAAATAGTCATTTATAAATGACCGTATTATAACATTTGAAAAAGTCTTCATCATTTTCAGTATTTCTCTCTGCATTATTTTTTAGAA
GCAACTCAAATTCTGTAATCATAATATTACCAAGTAAGTCAGTCTTTATTTTTGCGTGAAAATCCCAAGTGTAGAAAAAAGGACATGAGTATAAGATCAT
TTAACTTGATTCCTTATAGGCTGATTTGGGTTGCTAATGTATTCGTACTAGATTAGCCACTTGGGAGGAATTCAATGCTGCATCATTCTGATAGCTGAAA
TAGTAAAAGTCAACTCCAAACAGCCTAAATTCTAGTATAAAAAGGGGGTGATCATACAAGTCCTAAAGTGTAGATCAGCAGTCACTGAACCTCTTAGAGT
CACAAGGCATTTCTTCTCCCAAAGTCATGACCTTTATATTTTGTTAGCCTTATAATTGACTAACAAAGCAACCTGCCAAGTTGGTGAAGGTTAATTATTG
CCTCATGAAATATACATTCATCGCATAAAAGAATTAAATAGGAAGATGGCCAAAAATGTAAAAAAGTCGTATAAATTTGTCTAAGAAGAAAAAGACCCAA
TTTAAGTAGTCTGTGACTTGACTCCCAAATTCTGACCTGATGGATGAAAGTGAAGATGTTTCGTATGGCAAATTCAGTAATGCTACCTCAGTATATAGTT
CTGTATACGTATTTGGACCAAAGTTATTAGATAAACCAAAAATATTTCATGAAGCATCTTCTGCTTCAGAGTCCATATCCAGCCACCCAGCTATGAATGT
ATTTAGAAAGATATTTGGTGGAGGTGGAATTTCTACCAGAGGTCAAGAGGATTTGTAGGGATAGCCTCAAGAATGCCAGATGAGTGTGTCAGAAAGCCTG
CTCCTACCTCTCGCCAGCTGCGTGACTTTAGGCAAGTCACTTAAGTACCTTATTTCAGTTTCCTCACCTGTAAATTGAACAGGGGTTGAATGGAATAAAA
AGCCCTTTGCAACTCTAAAAGTCAATTAACACACTTACTAAGGTGTTTTAAGTGACCAGGAAGGAAATCAGAACTAACCTGGATTGTTAGCGAAGAAAAC
AGAAGCCACCAACAAGCCTATCTGTCCTTTGCAATTTTGCTCCAAGAGCCTATTAGCAATTTGAATTCTGAGCCTCTAAGAAAACTTATGCTCAGGTGGC
CCCTCCAAGTGTTGGTGCCAGAGCACTCTTGCCTTGTATCCTCACCTACGCCTTCCATGAACTCATAGCAGTGCTGTGGCACTGCAGGGGTGTTTTATGC
ATTCACGTTAGGAGCATGAGCAGAACTGCATATGCCAGCACCACATGGGCAGCAGAGACTCCCCACTGCCAGATGGATGATAATGGAGCTGCACTGGGAA
CAACCAGGACTGTCCCAGTCAACATGATACAGATGAACATCCTGCCTTAAGTCACTAGCTCTCTCCAAAGCCAGATAAAGTGGGTTTCTTCACTTACATC
TCTCTAATCTTGGCTGCCTTATTCAACCTACAGACTCTATGTCAGTGCTGGATTTTCTCCCCTTGCCCTTTAGGTAAGCAGAGTAGGCAGGAGGAGATTT
GAAAGCGTGTCATACATATTGCCTTGAAAGAAAGGACATTCAGGTGTCCCTTCGGGGTTCTGTAACAATTAGGCTATGTGTGCTGAGAGAGGGAGCGGAG
TCATTTGCTGATGTGCTGCTACCTGTAACTCAAATGCCTCATAGGAATACCAGCGGACAAACACATAGAGGAAAAGTTGAATCTTTCCTATATTGGACAA
TCTTCCTTCAGTCTTGTTTCTGCATCAAAAAGTCTGGGACACAGAGTGCTACAGGATGCCTGGGCTAAGGACTGTAACAGAAAAATATCAACATCAGAGC
CTGGCACAGTGGCTCACACCGGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTCAGGTCAGGAGTTCGAGACCATCCTGGCCAACATGGT
GAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCACGGTGGCACATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGTCAGAAGAATCACTTG
AAAACAGGAGGCTGAGGTTGCAATGAGCCAAGATTGCACCACTGCACTCCAACCTGGGCAACAGAGCGAGACCCCATCTTAAAGACCCTGTCTCAAAAAA
GAGAGAAAAAGAAAAAGAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00168220

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.