Detailed information on ENST00000507603

lncRNA-RNA interactions

Number of interactions: 90

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000327381 XK, Kell blood group complex subunit-related family, member 4 protein coding ENST00000507603 588 318 UTR3 Trans
ENST00000336824 fibronectin type III domain containing 3B protein coding ENST00000507603 529 307 UTR3 Trans
ENST00000370435 opioid growth factor receptor-like 1 protein coding ENST00000507603 517 317 UTR3 Trans
ENST00000371065 leptin receptor overlapping transcript protein coding ENST00000507603 610 319 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting protein protein coding ENST00000507603 652 310 UTR3 Trans
ENST00000423516 transketolase protein coding ENST00000507603 518 307 CDS Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000507603 514 321 CDS Trans
ENST00000470361 potassium large conductance calcium-activated channel, subfamily M, beta member 2 processed transcript ENST00000507603 610 301 noncoding Trans
ENST00000472528 transketolase nonsense mediated decay ENST00000507603 518 307 UTR3 Trans
ENST00000475187 THO complex 5 retained intron ENST00000507603 616 298 noncoding Trans
ENST00000479069 bone morphogenetic protein receptor, type II (serine/threonine kinase) processed transcript ENST00000507603 627 301 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000507603 541 311 CDS Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000507603 632 318 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000507603 503 315 UTR3 Trans
ENST00000569455 cadherin 13 processed transcript ENST00000507603 711 311 noncoding Trans
ENST00000569540 transmembrane protein 170A protein coding ENST00000507603 503 315 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000507603 675 303 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000507603 559 311 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000507603 603 312 UTR3 Trans
TCONS_00005323 polypyrimidine tract binding protein 2 novel protein coding ENST00000507603 606 317 UTR3 Trans
TCONS_00005324 polypyrimidine tract binding protein 2 novel protein coding ENST00000507603 606 317 UTR3 Trans
TCONS_00006081 processed_pseudogene novel protein coding ENST00000507603 609 318 UTR5 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000507603 661 315 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000507603 617 321 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000507603 617 321 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000507603 617 321 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000507603 612 319 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000507603 643 317 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000507603 675 299 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000507603 639 306 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000507603 639 306 UTR5 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding ENST00000507603 607 311 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 605 308 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 523 310 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 630 311 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000507603 623 308 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding ENST00000507603 649 311 UTR3 Trans
TCONS_00116334 low density lipoprotein receptor class A domain containing 4 novel protein coding ENST00000507603 653 305 UTR3 Trans
TCONS_00118345 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000507603 649 323 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000507603 654 319 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000507603 537 313 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000507603 624 305 UTR5 Trans
TCONS_00143293 nucleoporin 35kDa novel protein coding ENST00000507603 549 311 UTR3 Trans
TCONS_00143298 nucleoporin 35kDa novel protein coding ENST00000507603 549 311 UTR3 Trans
TCONS_00147745 lincRNA novel protein coding ENST00000507603 581 279 UTR3 Trans
TCONS_00150689 ectodysplasin A receptor novel protein coding ENST00000507603 640 315 UTR3 Trans
TCONS_00159951 zinc fingers and homeoboxes 3 novel protein coding ENST00000507603 616 308 UTR5 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000507603 697 311 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding ENST00000507603 697 311 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000507603 619 310 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000507603 619 310 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000507603 619 310 UTR3 Trans
TCONS_00168418 dual specificity phosphatase 18 novel protein coding ENST00000507603 608 296 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000507603 609 309 noncoding Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000507603 624 320 UTR5 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000507603 599 319 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000507603 624 320 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000507603 624 320 UTR5 Trans
TCONS_00175515 transient receptor potential cation channel, subfamily C, member 1 novel protein coding ENST00000507603 627 320 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000507603 518 307 UTR5 Trans
TCONS_00180673 transketolase novel protein coding ENST00000507603 518 307 UTR5 Trans
TCONS_00182243 homogentisate 1,2-dioxygenase novel protein coding ENST00000507603 633 322 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000507603 604 319 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000507603 637 302 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000507603 627 300 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000507603 739 316 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000507603 628 321 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000507603 604 296 noncoding Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000507603 514 321 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000507603 669 319 UTR5 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000507603 609 315 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000507603 628 307 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000507603 617 305 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000507603 647 312 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000507603 616 318 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000507603 616 318 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000507603 615 302 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000507603 615 302 UTR5 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000507603 502 298 UTR3 Trans

Sequence

>TCONS_00251973 (1289 nt)
GACACAGCCAACGTGGGGTCCCTTCTAGGCTGACAGCCGCTCTCCAGCCACTGCCGCGAGCCCGTCTGCTCCCGCCCTGCCCGTGCACTCTCCGCAGCCG
CCCTCCGCCAAGCCCCAGCGCCCGCTCCCATCGCCGATGACCGCGGGGAGGAGGATGGAGATGCTCTGTGCCGGCAGGGTCCCTGCGCTGCTGCTCTGCC
TGGGTTTCCATCTTCTACAGGCAGTCCTCAGTACAACTGTGATTCCATCATGTATCCCAGGAGAGTCCAGTGATAACTGCACAGCTTTAGTTCAGACAGA
AGACAATCCACGTGTGGCTCAAGTGTCAATAACAAAGTGTAGCTCTGACATGAATGGCTATTGTTTGCATGGACAGTGCATCTATCTGGTGGACATGAGT
CAAAACTACTGCAGGTAATATGTCAGAAATAAACAAACACAGTTTGTAAAATTTTGTTTTATAGATTTAGGGGTACAAGTGCAGATTTGCTAGTGGATAT
ATTCAGTAGTGGTGAAGTCTGAGCTTTTAGAGTACCTACCCCTCAAATAGTGTGCATGGAACCCATTAGGTAATTTTTCATCCCTTAACCCCCCCAAAAC
TCTTCTACCTTTTGAAGTCTCCAGAGTCTATTACTCCACTCTCTATGACCATGTGTACACATTATTTAGCTCCCACTTGTGAGAACATGTGATAAACAAA
TGCAGTTTTACTCTTTGTATTTCTATTTTTATATTTTGAAATTACCCTATATTTCCATGGGCTGTTAAATGCAGTATATATATTATTAGAAACTTTTCTG
AGTTTTTAAAAATTAGGTAGTAAATAGTAGCTTTTAAATTGCACACATATGTCAGAGGTGCAGAGCAGGGAGGACTTCTGATGCTTCTCACACTTGCCAA
GATGGTGTCTCTCTGCTTTGGATCTTTTCCTTCAATTTCTATATCAGGTATTGTTTTAAGAATTGATTCCAGGCCGGACGCGTTGGCTCATGCCTGTAAT
CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGGGGTCAGGAGATCAAGACCATCCTGGCGAACACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAAAAAAAAAAATTAGCCAGGGGTAGTGGCGGACGCCTGAAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGGGGTGGAGCTT
GCAGTGAGCGGAGATCATGCCACTGTACTCCAGCCTGGGCAACACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.