Detailed information on ENST00000507605

lncRNA-RNA interactions

Number of interactions: 73

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000217185 protein tyrosine kinase 6 protein coding ENST00000507605 612 278 UTR3 Trans
ENST00000227155 CD82 molecule protein coding ENST00000507605 649 284 UTR3 Trans
ENST00000299157 IKBKB interacting protein protein coding ENST00000507605 577 287 UTR3 Trans
ENST00000304748 formyl peptide receptor 1 protein coding ENST00000507605 536 284 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000507605 621 282 UTR3 Trans
ENST00000405000 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 retained intron ENST00000507605 636 283 noncoding Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000507605 607 290 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000507605 533 291 UTR3 Trans
ENST00000542869 protein tyrosine kinase 6 protein coding ENST00000507605 612 278 UTR3 Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000507605 633 288 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000507605 545 280 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000507605 661 287 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000507605 548 282 UTR3 Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000507605 602 282 UTR5 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000507605 571 255 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000507605 571 255 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000507605 629 284 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000507605 673 281 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000507605 649 284 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000507605 649 284 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000507605 615 267 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000507605 623 277 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000507605 693 281 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000507605 689 278 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000507605 634 288 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000507605 634 288 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000507605 644 271 noncoding Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000507605 629 281 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000507605 544 281 UTR3 Trans
TCONS_00101152 myosin phosphatase Rho interacting protein novel protein coding ENST00000507605 607 282 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000507605 607 282 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000507605 616 286 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000507605 616 286 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000507605 605 290 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000507605 632 280 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000507605 639 277 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000507605 666 282 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000507605 666 282 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000507605 666 282 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000507605 641 283 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000507605 641 283 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000507605 641 283 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000507605 629 283 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000507605 612 278 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding ENST00000507605 612 278 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000507605 659 282 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000507605 659 282 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000507605 659 282 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000507605 602 282 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000507605 658 281 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000507605 604 293 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000507605 604 293 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000507605 618 259 UTR5 Trans
TCONS_00190799 sorting nexin 25 novel protein coding ENST00000507605 621 282 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000507605 603 283 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000507605 638 269 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000507605 663 282 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000507605 648 283 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000507605 663 282 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000507605 639 282 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000507605 657 282 UTR5 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000507605 612 284 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000507605 618 271 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000507605 618 271 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000507605 618 271 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000507605 619 272 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000507605 662 282 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000507605 606 287 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000507605 649 283 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000507605 647 282 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000507605 639 272 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000507605 639 272 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000507605 658 274 UTR3 Trans

Sequence

>TCONS_00253752 (1733 nt)
ACTTGAATGAGCGGCGGCACTGCAGCCAAAGGTCTTCACGGGGCAGAAGAGGGAGTACAGCTGATGTCTGCTGTGCGGCAGGGTGCCTCGAGTCTTTATT
GGTAAAGATTGTATAGGCGGATGCAGTGATCTAGTCTCTTTGCAACAGAGTGGGGAACTGCTGACGCGGCTAAAGCAGATTGGAGCTCTGCAGTAACCAC
AGAAGACACTTCAGTTATCTCCACGGAGATTTATTTGTCCAGATTGTGAAACTCCTTGATCAGATGGAGTCTCACTCTGTCGTCCAGGCTGGAATGCAGT
GGTGCGATCTTGGCTCACTGCAAGCTCCTCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGGAGCTGGGAGCACAGGCGCCCACCACCACG
CCCGGCTAATTTTTTTTGTATTTTTTGTAAAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCTGCCTCGGCCT
TCCAAAGTGCTGGGATTACAGGCATGAGCCGCCACATCCGGCCCATTTTAACCACTTTTAAGTATATGATTCATTGGCATGAAGTACATTCACACTGCTG
TGCAGTCATCACCACCACCATCTCCAGAACATGTTTCTTCTTCCCAAACTGAAACTCTGTACCCAATAAACACTAACTCCCTGTTTCCCCCTTTCCCCAG
CCCCTGGCAACCACCCAATTTGGCTGGGGGTTTTTTCAATACTTCCCTAGAAATCTGGTTTTTCATGTAATTCTCGTTCTTATCCCTCCTTACATTCTTA
CATTCTTTTGTAGCTATGGAACCAAGAACACTGTGTATGGTGAATATTTAACATAATAACATTACCTGTCTTCTGTGATCTTCCCAATGCACAGATTCCA
GTATCTGGCTTAACTTTTTGATTATTCATTTTGACTCATTTTTCCCTAACACACTTTTGCCAATTTTTAAAAATCCTATCATTATTACTGCTTTCCTCTG
TAATATTTTCTAATTAGCAAGGTAAAACTTAATATTAGCAGCTTCAATTACTTGAGTGAGAGGATGACTGAAAATCAAATTTTCCTATTACTCCAAATCT
GGTCAATTTGTAAATTTAATATACAGATTTGCCAACAATGAAATAATAAACAATAAGCTTTATTTCCAAAAAGAACAAATGCTTTCATTTTTATTAGGCA
AAAATACTAAGTCTTTTTTTGAGACGGAGTCTCACTCGGTCACCCAAGCTTGAGTGTGGTGGCGCCATCTTGGCTCACTGCAACCTCTGCCTCACAGGTT
CAAGCGATTCTCCTGCCTCTGCCTCCCGTGTAGCTGGGATTACAGGCACACGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCA
CCATGTTGGTCAGGCTGTTTTTGAACTGACTTCAGGTGATCTGCTCACCTCAGCCTTCCAAAGTGCTCAGATTACAGGCATGAGCTACGGCACCTGGCCG
TAAGTCAGTCTTTAACACTGACAGAAACAACTGCAACTGGCTCCAAAATACTCTACAGAAAGCTGCAAGCCCAGAATTAATTTAATCAACACAAATACAT
TTGCTTCTTTTTGAACTTCTAAAATCTTTCACTAGAGGGCTCATGACTTGTTTAAAACTTATTTCAATACCCAGTGTAAGAAACCTTTCCATTCTAAAAA
TTAAAGCAGTGAATCTGAAGAGAGGTCTGGCTTG

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.