Detailed information on ENST00000508969

lncRNA-RNA interactions

Number of interactions: 54

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000508969 626 299 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000508969 526 303 noncoding Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000508969 544 307 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000508969 520 286 noncoding Trans
ENST00000479069 bone morphogenetic protein receptor, type II (serine/threonine kinase) processed transcript ENST00000508969 545 286 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000508969 633 298 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000508969 597 294 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000508969 586 305 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000508969 570 293 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000508969 644 282 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000508969 648 290 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000508969 640 307 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000508969 648 290 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000508969 640 307 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000508969 640 307 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000508969 648 290 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000508969 617 304 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000508969 604 308 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000508969 604 308 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000508969 634 291 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000508969 635 285 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000508969 635 285 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000508969 627 291 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000508969 528 265 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000508969 603 302 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000508969 605 300 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000508969 659 284 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000508969 659 284 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000508969 659 284 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000508969 626 299 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000508969 559 308 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding ENST00000508969 559 308 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000508969 543 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000508969 543 271 UTR3 Trans
TCONS_00173891 RNA, U6 small nuclear 461, pseudogene novel protein coding ENST00000508969 553 285 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000508969 610 302 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000508969 633 296 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000508969 614 274 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000508969 618 311 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000508969 662 297 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000508969 574 291 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000508969 527 310 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000508969 544 307 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000508969 555 298 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000508969 555 298 UTR3 Trans
TCONS_00229218 leucine-rich repeats and death domain containing 1 novel protein coding ENST00000508969 601 300 UTR3 Trans
TCONS_00229219 leucine-rich repeats and death domain containing 1 novel protein coding ENST00000508969 601 300 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000508969 624 296 UTR5 Trans
TCONS_00244033 WNK lysine deficient protein kinase 2 novel protein coding ENST00000508969 602 287 UTR5 Trans
TCONS_00244038 WNK lysine deficient protein kinase 2 novel protein coding ENST00000508969 602 287 UTR5 Trans
TCONS_00244055 WNK lysine deficient protein kinase 2 novel protein coding ENST00000508969 602 287 UTR3 Trans
TCONS_00244067 WNK lysine deficient protein kinase 2 novel protein coding ENST00000508969 602 287 UTR5 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000508969 604 283 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000508969 655 281 UTR5 Trans

Sequence

>TCONS_00249092 (2164 nt)
GGGCCGGGTCTCCAGGGAGGACCTGATTTTTCTTCACCCATAGTTAGGGAGGCGCAATCGCCCTGGCTTTGGGGCTGGGGCCTCCGGGGAGGTTCCGGTA
GGGGCGTTGGAGAGGCCGCTCTTTTTGCAAGGCCCGAGACGGCGGGCCCTGCGCAGGCCGCCCTATTCCGCGCCCTCAGGGCGTCAGTATCCGCCTGAGG
CCGGATACCCCAGCTGGGCCCGGATGCCGTCGATGGGCCCGGAGCATCCTCGGCGCTGCCCTCCCAGAGCCCCGCAGAGGCTGAGGTGGCGCGGGGGGCG
GGCCCGGCTCCGCGAGAAGCAGCGGCAGCGAGGGCTGGAGGACCCGGGCTACGGGGCTCTGGGGCGTCTGGCCTGGGTGGGACTGAGCCCATTCGGGGGG
ACTCCGGGGTTCTGGTGTAGGTAGATCCGGGGCAGGCTCAGGACCAAGTCCCTCTCCTTCCACCAAGGAGCGCCCAGAGGCCGGCGGGAGCTCCAGGTTC
ACCTCCTCCTCCTCCAGGGTTATTTCAAGTCCCAAAAAGCAAGGATGAACATCTAGAACGAGAAGAAAAACAATCTGGAGGTTAGTATGTGCACACCTGG
GGACTCCTGTGTTAACTTCTGGTGTTTCAGCCTAAGAGAGAATGTTAATATAACCCTGGTCCTGGAACACCATGCTGACCAACACCTACCAGCTTTCAGG
AGATAAGACAGCTGGCTGATGGGGCAGGGATCCAGAGAAGGCACGGGTCCACACCTGCACATGTTGCCCAGTGGCAGAGTTCATGACAAGCAATAAGCCC
CAGGACAATGTCATTCCCAGCCACCTGGCTGTCATCTGCTCTTTCATGACCCCTCTCTCCTGGTACCTCTAGGCACTGGCATGTCCTCCAGAGGCTGTAG
GAGGGCATGATACTCAGTACTCTCACACCTGCAGGAGGCAAGAAAGATGGAAACAGCTAAATACCATGGCTTCTGGATTTTTTTTGGTGGGCATGGCATA
TTTTGCATTTGCTTTAATAATGGTGGAACCCAGTCAGTGGCTTGCAATACGGATCTAGATGACTCTGGACACCTGTAGAGATTTTGACAATTTCCAGAAG
GTCACAAGTTCTTGGAGACTTTTTCATGAGTTCTTTGACTGAAAAGGTGGTTCAAAGAGCTTCTATACTGACTTAGAAAATGTTGCAGAGGCCAGGTGCG
GTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGTTAGGAGTTTGAGACCAGTCTGACTAACATGGTGAAACCCCCT
CTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGACACACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGT
CAGAGGTTGCAGTGAGCCAAGATCGTGACACTGGACTCCAGCCTGAGCGACGGAGCGAGACTCTATCTCAAAAATAAAATAAAAATAAAAATAAAATAAA
TAAATAAATAAATAAATAAATAAAAAGGAAGACAAAAGAAAGTGTTGCAGACACTGGTGAACAGGTAGGCCCTCTCCTGCCACTCCAGGTAAAAGTTTCT
TGGCCACAAACCTGATTTAGCAATATCCCTTCATCTTAGGTGGGTAACAGAAAGCTATTCATGACCTATCCAAGCATGGAGAGGGGATTTGACTTAGAAA
ACTGTTAGGTGGACTAGTTGCTGAAAGAAAGTGCATTCTAGGGCTCACAGGCCTACACATAGAGTTGCTATCACATAAAGCATATGTACGAATTCTTTCT
GAGCCCATGACAAGATGAGGGTGCACTTCATCAGTCTCCTATGCTGGTATGAATAGGTACTTGCCTGAAAAATAAAAGAATAATTCAGGAAGCCCATTCT
TCTACAGGACACCAGGCAGTACAGTAGGAGTCCTGGGGTTGCTGTGGTATTTATGTTTTAAGGTTGTCTTTTAATCATCTTCAGCAAATTCAACAGTCTT
CAGGAACATAAAAAAATTATTCAACATTGCATAAAAACGACCAAAAATGTATCCATGATAAAGAACTGTACCAATATAATAATAACATTAATAACAATCA
TAATGGTGATGATATAAATGTCAATTTAATGAAGAGAGTAATAAAAATGCAGATATTTAAGAACA

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.