Detailed information on ENST00000509318

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000489959 carcinoembryonic antigen-related cell ad... processed transcript ENST00000509318 706 348 noncoding Trans
ENST00000578119 DSG1 antisense RNA 1 antisense ENST00000509318 668 287 noncoding Trans
ENST00000582217 myosin ID processed transcript ENST00000509318 838 349 noncoding Trans

Sequence

>ENST00000509318 (574 nt)
AATCAAGCCCGGGCAATGGCGGGCGCCCCTCCCCCAGCCTCGCTGCCGCCTTGCAGTTGGATCTCAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGG<br />GCGTAGGACCCTCCGAGCCAGGTGTGGGATATAATCTCGTGGTGCGCCGTTTTTTAAGCGGGTCTGAAAAACGCAATATTCGGGTGGGAGTGACTCGATT<br />TTCCAGGTGCGTCCGTCACCCCTTTCTTTGACTCAGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCG<br />CGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCA<br />TGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTTGGCCATCTTGGCTCCTCCCCCCAGGACCTAAATATTAGGATTCTGGAAACCAAAATGGAGGAAATG<br />ATGATAAGACTAAGAATGCTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCATTCT

Expression



Full and truncated open reading frames discovered in ENST00000509318

In silico ORF/peptide predictions
>peptide 1 (76 aa)
NQARAMAGAPPPASLPPCSWISDCCASNQRDSVGVGPSEPGVGYNLVVRRFLSGSEKRNIRVGVTRFSRCVRHPFL

>peptide 2 (63 aa)
MNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSPQDLNIRILETKMEEMMIRLRMLRGTI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT025954 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5RD58|CL004_PONAB (Evalue: 7.0E-7)