Detailed information on ENST00000509612

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000510844 transcribed_unprocessed_pseudogene processed transcript ENST00000509612 866 328 noncoding Cis
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding ENST00000509612 1052 404 UTR3 Cis

Sequence

>TCONS_00189341 (737 nt)
AAAAAATAACCTATATTTAGCTTGAGAGTATATTATGTAACTTTTTAAAGCCAAGTTTTCATTTCAAATCATTTTCTTTCTATTGTTTTGCTTGAATTAA
CATTGTCTGCATTCCTTAAGGACACAGCAACTGATAGCAGAGAGTGAACAGAATCTGCAGGGAATTAAAAGAGGAAAAAAACAATTATTTAAAGTTTATT
ATGATTATTTCACATAATAATTAAGAATTAGCAATACTTACTATAGGTGGACAGATTATTAATTTATTGAGGCATTTCAGCTTTTCCTGTTGATAAGTGA
CATTTGTGGTGATCCCATTCTGAATGACAAAGGACAACTAATTCCCTGAAGAATAGGATTCTAGGGTTAGTCCTTTGTGACTATAGAGAAGTATGTATGT
AAAGCACTGAGGGGAAAAAAAAGATTACTGAAAAGAGGTAATATAATGTCCTTCACCACATTATATTTGTTCTCTCTTTCCTCCAATGTCTTTGGTCATG
CAGAACAAGCTGACTGACCTGGAGATACTTGCATTGCTGATTGCTGCACTAAGCCACGATTTGGATCACCGTGGTGTGAATAACTCTTACATACAGCGAA
GTGAACATCCACTTGCCCAGCTTTACTGCCATTCAATCATGGAACACCATCATTTTGACCAGTGCCTGATGATTCTTAATAGTCCAGGCAATCAGATTCT
CAGTGGCCTCTCCATTGAAGAATATAAGACCACGTTGA

Expression



Full and truncated open reading frames discovered in TCONS_00189341

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.