Detailed information on ENST00000509612

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000510844 transcribed_unprocessed_pseudogene processed transcript ENST00000509612 866 328 noncoding Cis
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding ENST00000509612 1052 404 UTR3 Cis

Sequence

>ENST00000509612 (738 nt)
AAAAAATAACCTATATTTAGCTTGAGAGTATATTATGTAACTTTTTAAAGCCAAGTTTTCATTTCAAATCATTTTCTTTCTATTGTTTTGCTTGAATTAA<br />CATTGTCTGCATTCCTTAAGGACACAGCAACTGATAGCAGAGAGTGAACAGAATCTGCAGGGAATTAAAAGAGGAAAAAAACAATTATTTAAAGTTTATT<br />ATGATTATTTCACATAATAATTAAGAATTAGCAATACTTACTATAGGTGGACAGATTATTAATTTATTGAGGCATTTCAGCTTTTCCTGTTGATAAGTGA<br />CATTTGTGGTGATCCCATTCTGAATGACAAAGGACAACTAATTCCCTGAAGAATAGGATTCTAGGGTTAGTCCTTTGTGACTATAGAGAAGTATGTATGT<br />AAAGCACTGAGGGGAAAAAAAAGATTACTGAAAAGAGGTAATATAATGTCCTTCACCACATTATATTTGTTCTCTCTTTCCTCCAATGTCTTTGGTCATG<br />CAGAACAAGCTGACTGACCTGGAGATACTTGCATTGCTGATTGCTGCACTAAGCCACGATTTGGATCACCGTGGTGTGAATAACTCTTACATACAGCGAA<br />GTGAACATCCACTTGCCCAGCTTTACTGCCATTCAATCATGGAACACCATCATTTTGACCAGTGCCTGATGATTCTTAATAGTCCAGGCAATCAGATTCT<br />CAGTGGCCTCTCCATTGAAGAATATAAGACCACGTTGA

Expression



Full and truncated open reading frames discovered in ENST00000509612

In silico ORF/peptide predictions
>peptide 1 (84 aa)
MSLVMQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to Swiss-Prot:
sp|Q28156|PDE5A_BOVIN (Evalue: 3.0E-30)