Detailed information on ENST00000509806

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000509806 546 285 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000509806 621 311 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000509806 546 285 UTR3 Trans

Sequence

>TCONS_00153158 (705 nt)
GCAGCATGGGAAGATGGACAGCAAAGCACCGATGTCCTGCTAGAACGTCCTGGCAGGTTGCTTATGGAACCACAGAGAACAGTCCCGTGACATTCGCGCA
CTTCCCTGAGGACACTGTGGAGCAGAAGACAGAGGAAGCAGTGGATCAGGACAAGTGGTATTGGACAGGCACCGTTCTCGCCGCTAGAGGTCCAGAGGAA
AGTAAGATGAGAAGGATCCTGCTTTTTGGAGGAAGACAGATGATGCCCAACATCGATAAATAACACCAAGAAAATAGGCCAGGCGCGGTGACTCACACCT
GTAATCTCAGCAGTTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGTCAGAAGTTTGAGACCAGCCTGGCCAACACAGTGAAACCCCACCTCTACTAAAA
ATACAAAAATTAGCCGGACGTGGTGGCGGCACGTGCCTGTAGTCCCAGCTACTCGGAGGCTGAGGCAGGAGAATCGCTGTAACCCAGGAGATGGAGGTTG
CAGTGAACCGAGATCGCGCCACTGCACTCAAGACTGGGCGACAGAGCAGGACTCCATCTCAAAAACAAACAAGCAAATGAACAAACAAAAAACACTAAGA
AAATGAAATAGGGTTATAGGAGAGAAAGTGGCTGTGGTGGGGAGGGGAGCTTCCCTTAGATTGAGTGGACAGAGAAGATGTCTGGAGACATTTGAGCTGA
GACCTG

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.