Detailed information on ENST00000509806

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000509806 546 285 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000509806 621 311 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000509806 546 285 UTR3 Trans

Sequence

>ENST00000509806 (706 nt)
GCAGCATGGGAAGATGGACAGCAAAGCACCGATGTCCTGCTAGAACGTCCTGGCAGGTTGCTTATGGAACCACAGAGAACAGTCCCGTGACATTCGCGCA<br />CTTCCCTGAGGACACTGTGGAGCAGAAGACAGAGGAAGCAGTGGATCAGGACAAGTGGTATTGGACAGGCACCGTTCTCGCCGCTAGAGGTCCAGAGGAA<br />AGTAAGATGAGAAGGATCCTGCTTTTTGGAGGAAGACAGATGATGCCCAACATCGATAAATAACACCAAGAAAATAGGCCAGGCGCGGTGACTCACACCT<br />GTAATCTCAGCAGTTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGTCAGAAGTTTGAGACCAGCCTGGCCAACACAGTGAAACCCCACCTCTACTAAAA<br />ATACAAAAATTAGCCGGACGTGGTGGCGGCACGTGCCTGTAGTCCCAGCTACTCGGAGGCTGAGGCAGGAGAATCGCTGTAACCCAGGAGATGGAGGTTG<br />CAGTGAACCGAGATCGCGCCACTGCACTCAAGACTGGGCGACAGAGCAGGACTCCATCTCAAAAACAAACAAGCAAATGAACAAACAAAAAACACTAAGA<br />AAATGAAATAGGGTTATAGGAGAGAAAGTGGCTGTGGTGGGGAGGGGAGCTTCCCTTAGATTGAGTGGACAGAGAAGATGTCTGGAGACATTTGAGCTGA<br />GACCTG

Expression



Full and truncated open reading frames discovered in ENST00000509806

In silico ORF/peptide predictions
>peptide 1 (86 aa)
SMGRWTAKHRCPARTSWQVAYGTTENSPVTFAHFPEDTVEQKTEEAVDQDKWYWTGTVLAARGPEESKMRRILLFGGRQMMPNIDK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT054672 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N7I0|GVQW1_HUMAN (Evalue: 2.0E-22)