Detailed information on ENST00000511677

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000511677 705 359 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000511677 705 359 UTR3 Trans

Sequence

>TCONS_00107867 (3386 nt)
ACATAAGTCAGAAGTAGAAAAAGGGACACAAACTAAGAAGGGTGCTGAGCGCTCGTCACCTGGAGGGACTTGTGCCTCTCTCAGTGGTAGTAGAGGGGCT
ACTTCTTCCTGCCACGGTCATGATTGAGAGGCAACGGGTGGCGAGTCTACAGGGGACGTCGTCGAGCAGACATGGGATAACTTTAAGGGAGAAGACAGAC
AAGGGGAGGGGCTCCTGTGATGGGATCAGTCAGATGCCTGCCTGGCCGCTCCCCCTGAGGGGACTTGGGCTCCTCTTAACATTGGCAGGCTGGTATAAAC
TTCCGGCTCAGATCAAGCTATGCCTGATGCTGCCTTAAGCCTTATGAGGTCGCCACGGAACCGCAGGTGAGGGTCTACTTGAACTCCGTAGCTTTAGCCG
TGGAGCTACAAACTGGAGGACAAGCGCAAGCCCTTGTCCTCACTCATTCATTATTCACACAGAGTATATAACAGTTTTTTTTTTTTTCTTTCTTGGAGAT
TCTTCAAGAAACTTGAACAAGAGAAAGATGAGAGATAGAAAGAGAGAGAGAGTGACCGGTCTGCCAGAAACCAGGACTCAGTCCTCCAGCATCCTGGGAT
GTGGACTGAGTCAAGGGAGGGCCGCTGTCAGAGCCACTTCCCTCCTAGAAAGAGACACAGAGGTGCCTAACAGAAAACCAGGGCTCTACCTTCTAGCGTC
CTAGAGAAACAGGCAGAGTCAAAAGAGGGACACCCTCATCAGGGCCGCTTCCCTCTTACTAGAACTGAAGTCAAATCTGACCTACCTGACCTCAGGGTCA
GAAGTCGAGGACTCAGATGTGGAATTTTTATGGACACCCACACGGTAGTCGATCCGCTCTCCTCTGAAAGACGGTCACCTTTCGGGGACCTAAAAATTTT
TTTTCAGGTGGCACCCCCCCTACAAGCCGGCCGGCCTTCTGGGGGAGCCCAGAGCGAGCCCGGCTCTTGCCTGGTGGCGTTTCTTGCTGGGGCCTCCGAA
TGTTGTACTTGAGCGAGTTAGAGAAAATGTCACACTTTGACATGAATTAAGAGTCTGTTTATTTAGCTGACGGCCAAGAAATGGCTAACTCTTAAAGTTC
TCTTGGCCCCGAAGAAAGGGCTAGATTTTCTTTTATACTTCAGTTTAGACAGGGGAAACGGGTCTAGTTAAAAGAATTTTACAGAAGTAAAGTAGGCAAA
AAAGTTAAAAGGATAAATTGTTACAGGAAAGTAAACAGTTCTAGGTGTAAGGGCTTTAAGACTATTACAAAGTGATAGACGTGGGGCTTTAGGCATTATC
AATCGGACAAATTCCTAGGAACTGCGGATATTGCTCGCCACAGTATCTTATGAGTTAATTGCATTCTTAGATGTGCTAAGAGTCAGCTTGCACAAGTTAA
GTCCTTGAGGAAGGGGCTGTCAGTGAAAAGGCCAAGATAAAATCTATCTAGCTCTCTTAGCTAAAAGAAAGTCAATTCAGGTAGAAACAAGGCTAAGTGA
TTAAAAGAAAAGGAAAGTCTAAGAACAAAGTTAATAAAAACAAGGTTAGGCATTACAGATGGGGTCATCCTTATATTCAGCACAGCGTTTGTCCTGAAAC
TTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCAAATAAATTGAATTTCTCTTTCTTAACAACAGATGTTTGAATACAGCCCCGTGACCCTTT
CTGCTCCTTCCTGCCTTCCTCCTCTCCTCTTCCTTCCCTTCCTTTTCAAGAGCAGGGTTTGCAAACTTTTTCTTGAAAGCATCAGATAGTAAATATTTTC
GAATTCGTGGGCCATACAGTCTCTTATAGTAGTTGCTCAACTCTGCCACCCATAGCATGAAAGCAGCTGATATAGTTGAATATGAGTCCCCACCCAAAAC
TCATGTTGCAATCCCCAGTGTTAGAGGTGGGGTCTGGTGGGAAGAGATTGGATCATGGGGGTGGATTTCTCATGAATGATTTAGCCTCATCCCTTTGGTC
CTGTCCTTGCAATAGTGAGTGAGTTCTTGCAAGATCTGGTTGTTTACGAGTGTGTAGCACCTCCCTCCTTACTCTCTTGCTCCCACTTCACCTTCTGCCA
TCATTGTAAGTAAGTTTCCTGAGGCCTCCACAGAAGCTCAGCAGATGTCAGTGTCATGCTCCCTGTATAGCCTACAAAACTGTGAGCCAATTAAAGCTCT
TTATATATTGCCCAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGACATGACTGTGTTTC
AATAAAACTTTATTGACAAACACATGCACAAGCAGGTCAGATTTGGCCCATGGGCATTAGTGTCCCAACCTCTGCTCTGGAGTATTCTCTTCAGCAACCT
CTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACACCTGGTTAATTTTTGTATTTTTTAAT
AGAAATAGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACATCAGGTGATCCAACCACCTCAGCCTCCCAAAATGCTGGGATTACAGCTGCC
CACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGTGATTTCACTATGTTGCCTAGGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACCTG
CCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCAGCTGGCCTCTAGATTTTTTTTTTTTTGATCGTTGCTTATTTGGTTTGACTTTCAT
TTTTTCCCCCATTGTGGTAGTCATTTTCTGAACGCCTGTTAGTTTGTCCATCTCTCTCCTCTGTAGTCCCTAGAGTCAGATGAACTCCTCTGCAGGTGCA
ATGGTGTAACACACTCTAGTGCTGAATTTTGAGCAGGAGAAAGAGAGCAAGAGTGACCAGTACCCTTGGAAACTCTGGCCTCCTGAGAATTTGGTGTCTT
CCCTGCAAAGGTTGCAAACCTGTTAACCCACAGGCCGGAGAGAGAGAGAAGTCAGAATCACGATCTGTTAAGCTTGAGTTTAATATTTGATGCACAGAGA
TCACTGAGTTTTTTGATAAGAATTAGAGGGGGAAGAAATAGCCAGAGAACAATTTCTATCTCCAGGTGAGGATTCAGGAGATAATTCTGCGAAAAGAACT
TCCTGAGAACTAAGATGGGGAAAATCACTGGTATTAGAAGAGTGAAAAGGTCAGTAATTAAGGCTACAACTGTGCTCTTAGAGGCAAAAGAAGAAAATGA
GACTGCCAGGCATGAATAATGAGAAATCTTTGATGGAATTAGCCATGCAGAACAGATATTAAATGCATCCTCATTCTTCTCATAGTC

Expression



Full and truncated open reading frames discovered in TCONS_00107867

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.