Detailed information on ENST00000515088

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000515088 576 287 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000515088 578 291 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000515088 558 276 noncoding Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000515088 634 286 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich ... novel protein coding ENST00000515088 602 286 UTR3 Trans
TCONS_00101152 myosin phosphatase Rho interacting prote... novel protein coding ENST00000515088 637 286 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting prote... novel protein coding ENST00000515088 637 286 UTR5 Trans
TCONS_00222403 protein tyrosine phosphatase, non-recept... novel protein coding ENST00000515088 628 286 UTR5 Trans

Sequence

>ENST00000515088 (2652 nt)
ACCTCCTCCCCGCGGGGCGTGCAGCTCCGAAGCTCTTTGGACCTAGCAGGTTCGGCGGCCGGGTTTGCTAAAGCTGCCATAACAAAATATTATAGAGTGG<br />TGGCTTAAACAACAGAAATTTATTTCTCACTATTCTGGAGGCTGTGAAGTACAAGATCAAGATTCTGGCTGATTGAGTTTCTGGTGAGAGGTGCCATTCA<br />CATCAAATGTAGCCATTTTAGAGGTGTCAAAATAAATCAGCCATATTTAATAAATTCCAGCTCTACTCTTCTACCCTGTAGCCCAAGAAGCAGCAACGAT<br />GGGGTCAAAGGATCATGCAGTATTTTTCAGGGAAATGACACAGTTAATTTTGAATGAAATGCCAAAAGCTGGGTATTCCAGCATATTAAATGATTTTGTG<br />GAATCTAATTTTTTTGTGATTGATGGAGATTCCTTGCTTGTCACATGCCTGGGTGTAAAATCATTCAAGTGGGGACAGAATCTCCACTTTTTCTATCTGG<br />TTGAATGCTATCTTGTGGATCTTCTGAGTAACGGAGGACAATTCACCATAGTTTTCTTTAAGATGGAGTTTCGCTCTTTTTGCACAGGCTGAAGTGCAAT<br />GCCGTGATCTCGGCTCACTGCAACCTCCACCTCCTAGGTTCAAGTGATTCTACTCTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCGTGCCACCATG<br />CTCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATATTGGTCAGGCTGGTGTCGAACACCTGACCTGAGGCAATCCACCCGCCTTGGTCTC<br />CCAAAGTTCTAGAACTTTTAATAAATAGAATTTTACAGTATGAACTCTTTGTATAAACCTTTCATTCAACATAATATTTTTGAGAGGCATCCATTTTGTT<br />GTGTGCAGTGGTATTTTGTTCCTTTTATCACTTTTGAGTAAGGTTTTATTGTAGAAATGTGCCACGGTTTGTTTACCCATTTTCTTGTTGAGTGGACACT<br />TTCCTGTTGAGCAATCTCTTTCAATATCTTGCCTAGATGAATAAAGCTACTATGTGCATTCACATGCAAGTCTTCGTGTGGACGTAAGTTTTTATTTTCC<br />TTGTGCATGTATCTGTGGTTGAAATATATGTTTTATAAAACTGCCAAAGCTTTTCCTAAGGTAGTTGTGCCCCTTTACACTCACTCCAGCAATGAATAAC<br />AGTTCTGGTGCCCTGTGTAGTTGCAAACATTTGTATTTGGTCAGTCCAGCCATTCTGGTGGATGTGTAGTGTTATGTCCCTGTGTTTTAATTGGTATTTA<br />TCAAATGGCTAATGATGTTGCCTACTTTTTCAAGTGCTTATTGTTCATTTGTATACTATGACTTGTGAAGCATCTGCTCGTATCTTTTGACCATTTTAAA<br />TTGGGTTCTTTATCTTTTTAATATTGAGTTGTAGTAGTTCTTGATATATTCTGTATACAACCTCTTGTCATGTATATTATTGCAAATATATTTTCCCAGT<br />CTGTGGCTTGTCACTTCATTTTGAGACAGAGTCTCGCTCTGTCACGTAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCGGG<br />TTCATGCCATTCTCCTGCCTCAGCCTCCTAAGTACTTGGAACTACAGGCATGCACTACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGACATGGGGT<br />TTCATCGTGTTAGCAGGATGGTCTCAATCTCCGGACCTCGTGATCTACCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATCAGCCACCGTGCCCG<br />GCTGCCACTTCGTTTTCTTAGTACTATCTTTGGATGACCAGATATTTTAATTTTGGTGAAATCTAACTTATTATTCTTTAATGGTTATTGTGCCTGTATC<br />CTGATAAGAATCATTGCCTATCTCTTAGTCACAAAGATATTTTCCTATATTTATTAATAATTCTAGAAGTATGTAGTTTCAGCTTTTGCATTTTGGTCTA<br />TGATATTTCTTGAATTAATTTTTGTGTGTTTGTGGTGTGAATGGGGGATTGAGGTTGATTTGTTCCAGCATCCATTGTTGAGAACATTTTTCTTCCACCA<br />GTGGATTGCTTTGGTTTCTTCATCAAAAAATCAAATGATTATATATGTGTAGGTCCATTTCTGGGCTTTCTACTATGTTCCATCAAAGGATTTAACAAAT<br />TACCAGTACCACAATGTCCTGATTTGTGTAATTTTATAGTAAATCTTGAAGCCCACTTTGTTCTTCTTTGTTTAACTTTGGCTATTCTAGGTTCTCTGCA<br />TTTCCACACGAATTTTAGAATCAGCTTGCCAATTTCTATTTAAAAAGAACGATGGGATTTTAATGATATTCATTAAATTTGTAGACCAATATAGTCTTTC<br />AGTTAGTGAACACAATATGTATCTCTGTTTTTTAAGATCTCTAATTTGTTTTATCAGTTTTGTAGTCTTCAGTGTGGAGGCGTTGCACATCTTTTGCTAA<br />ATCTATTTCAAGATATTTCATGTTTTGATCTTACCGTAAATTGAATTTTTAAAAATAATTTTTTAGTTTTTGCTGCTTGTATATAGAAGTAGAATTGATT<br />TTTGTTTGTTAACTGGTATCCTGCAATCTTATTAAAACAACTTATTAATTTC

Expression



Full and truncated open reading frames discovered in ENST00000515088

In silico ORF/peptide predictions
>peptide 1 (97 aa)
MGSKDHAVFFREMTQLILNEMPKAGYSSILNDFVESNFFVIDGDSLLVTCLGVKSFKWGQNLHFFYLVECYLVDLLSNGGQFTIVFFKMEFRSFCTG

>peptide 2 (77 aa)
MPFSCLSLLSTWNYRHALPCPANFFVFLVDMGFHRVSRMVSISGPRDLPASASQSAGITGISHRARLPLRFLSTIFG

>peptide 3 (53 aa)
MYIIANIFSQSVACHFILRQSLALSRRLECSGAILAHCNLCLPGSCHSPASAS

>peptide 4 (50 aa)
MIFLELIFVCLWCEWGIEVDLFQHPLLRTFFFHQWIALVSSSKNQMIIYV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT099132 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5H9U9|DDX6L_HUMAN (Evalue: 6.0E-46)