Detailed information on ENST00000515580

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000515580 525 310 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000515580 607 299 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000515580 540 299 UTR3 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000515580 558 302 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000515580 558 302 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000515580 558 302 UTR3 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000515580 528 304 UTR3 Trans

Sequence

>TCONS_00244728 (2131 nt)
GAGGGCTGTAACCTTATTCCAGATATGACAACCTATGAACTGTCTTTGCCTTTCCTCACTAAAGTGGGGAGGCAAAACCCCAATGGCGAGGCAGCAGGGG
AAGAGCACTCAACTTAGAAGAACCGGGTTATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGTCTGAAGCGGGCAGATCACTTGA
GGTCAGGAGTTCGAAACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGAGTGTGGTGGTGCAGGCCTGTAATCC
CAGCTGCTTGGGAGGCTGAGGCACAAAGAATTGCTTGAACCCAGGAGACAGAGGTTGGGGTGAGATGAGATTGCACCACTGCACTCCAACCTGGGCAACA
GAGCGAGACTCCATCTCAAAAAAACAGAAGAAGAACTGGGTTCTAGTCCTGCCTTCTGCCTTCGTTACCCTGGGACTCCTGGTGAGACACTGCTATATAA
AGGGAACCAGCCACCTGCCCTCCCAACACTGTATATCTGTTGCAAGGCTCAGTCACAGAGGTGCTTTGAAATGCAGACGTTCCACATGAATATAAGTTTT
GGGTTTTAAGTTTCTCTTAAAATTCCCTGATTGGTTGAAAAATCACATACCAATCCATGATTGAGTGATACAGTCCTCACATAAATAAAAAGCCTGTTCC
TCCCACTGGGAAGCATTTGAGCAGAAAGTAGAATCCCTAAGGGAATGAGTCCTAATTGCAAAGGTGAGGAAGGTGCTGCAACTTGTATGTCTGATCAAGA
ATATTTTGACTTAGTCGTGATTCTTTTTTTCCCTTAGGTTGATGAGAACATGAAGGTAGCACAGAAAAGAGATGCTGTCTTGCAGGGAATGTTTTATTTC
AGGAAAGATATTTGCAAAGGTATTACATTATCTTAGATTTCTAATGTCAGCTTATGCTGCAACAAGCTGCTAAAGCTCCCCTGACCCTCTTCTCCGGCAG
GTGGCAATGCAGTGGTGGATGGTTGTGGCAAGGCCCAGAACAGCACGGAGCTCGCTGCAGAGGAGTACACCCTCATGAGCATAGACACCATCATCAATGG
GAAGGTAGGAGGGTGGCCCTGTACAGTACCCCTCACTGTGCACATCCCCCGGCAGGGAGTTCATAAAGTGTCCTGCTTCTTGTAGGAAGGTGTGTTTCCT
GGACTGATCCCAATTCTGAACTCTTACCTTGAAAACATGGAAGTGGATGTGGACACCAGATGTAGTATTCTGAACTACCTAAAGCTAATTAAGAAGAGAG
CATCTGGAGAACTAATGACAGTTGCCAGATGGATGAGGGAGTTTATCGCAAACCATCCTGACTACAAGCAAGACAGTGTCATAACTGATGAAATGAATTA
TAGCCTTATTTTGAAGTGTAACCAAATTGCAAATGAATTATGTGAATGCCCAGAGTTACTTGGATCAGCATTTAGGAAAGTAAAATATAGTGGAAGTAAA
ACTGACTCATCCAACTAGACATTCTACAGAAAGAAAAATGCATTATTGACGAACTGGCTACAGTACCATGCCTCTCAGCCAGCCCGTGTGTATAATATGA
AGACCAAATGATAGAACTGTACTGTTTTCTGGGCCAGTGAGCCAGAAATTGATTAAGGCTTTCTTTGGTAGGTAAATCTAGAGTTTATACAGTGTACATG
TACATAGTAAAGTATTTTTGATTAACAATGTATTTTAATAACATATCTAAAGTCATCATGAACTGGCTTGTACATTTTTAAATTCTTACTCTGGAGCAAC
CTACTGTCTAAGCAGTTTTGTAAATGTACTGGTAATTGTACAATACTTGCATTCCAGAGTTAAAATGTTTACTGTAAATTTTTGTTCTTTTAAAGACTAC
CTGGGACCTGATTTATTGAAATTTTTCTCTTTAAAAACATTTTCTCTCGTTAATTTTCCTTTGTCATTTCCTTTGTTGTCTACATTAAATCACTTGAATC
CATTGAAAGTGCTTCAAGGGTAATCTTGGGTTTCTAGCACCTTATCTATGATGTTTCTTTTGCAATTGGAATAATCACTTGGTCACCTTGCCCCAAGCTT
TCCCCTCTGAATAAATACCCATTGAACTCTGA

Expression



Full and truncated open reading frames discovered in TCONS_00244728

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.