Detailed information on ENST00000517396

lncRNA-RNA interactions

Number of interactions: 60

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000517396 654 275 UTR3 Trans
ENST00000301178 AXL receptor tyrosine kinase protein coding ENST00000517396 616 303 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000517396 635 303 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000517396 586 300 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000517396 603 298 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000517396 621 305 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000517396 625 290 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000517396 625 290 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000517396 611 281 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000517396 611 281 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000517396 611 281 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000517396 611 281 UTR3 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000517396 528 299 UTR3 Trans
TCONS_00025775 zinc finger, MIZ-type containing 1 novel protein coding ENST00000517396 528 299 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000517396 602 273 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000517396 606 296 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000517396 626 300 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000517396 626 300 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000517396 540 294 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000517396 654 275 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000517396 654 275 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000517396 654 275 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000517396 635 303 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000517396 635 303 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000517396 635 303 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000517396 613 292 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000517396 607 297 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000517396 607 297 UTR3 Trans
TCONS_00118361 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000517396 601 300 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000517396 615 267 UTR3 Trans
TCONS_00125532 AXL receptor tyrosine kinase novel protein coding ENST00000517396 616 303 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000517396 617 275 noncoding Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000517396 620 297 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000517396 627 276 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000517396 627 276 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000517396 617 294 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000517396 646 300 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000517396 617 294 UTR5 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000517396 621 300 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000517396 650 300 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000517396 590 298 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000517396 633 276 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000517396 616 301 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000517396 617 275 UTR5 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000517396 601 293 UTR5 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000517396 607 275 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000517396 638 301 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000517396 638 301 UTR3 Trans
TCONS_00231159 zinc finger CCCH-type, antiviral 1-like novel protein coding ENST00000517396 628 270 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000517396 668 300 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000517396 654 294 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000517396 608 275 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000517396 636 300 UTR5 Trans
TCONS_00238831 cytochrome P450, family 7, subfamily B, polypeptide 1 novel protein coding ENST00000517396 578 298 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000517396 610 300 UTR5 Trans
TCONS_00244033 WNK lysine deficient protein kinase 2 novel protein coding ENST00000517396 604 278 UTR5 Trans
TCONS_00244038 WNK lysine deficient protein kinase 2 novel protein coding ENST00000517396 604 278 UTR5 Trans
TCONS_00244055 WNK lysine deficient protein kinase 2 novel protein coding ENST00000517396 604 278 UTR3 Trans
TCONS_00244067 WNK lysine deficient protein kinase 2 novel protein coding ENST00000517396 604 278 UTR5 Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000517396 572 302 UTR3 Trans

Sequence

>TCONS_00244728 (2834 nt)
AAAAGTCTATTGCACTGAGCTGTGGCAAACAGCAAATGAGATTACCAAAGATTTGAACAACTGTTAATTTAGAAAAAGTGCTGTCGTTGTAATAACAACT
TCTAGGAGACCGGCAGCCCTTTTCAGCCCGTTCGTAAGAAGGCAACAAGTTCTTCTCCTCTACAGAAGGATTTTGCAAACAATTCGGCAAGTTCCAAATG
ATTCTGATCGCAAATACCTGAAAGATTGGGCAAGAGAAGAATTCAGAAGAAACAAAAGTGCCACCGAAGAGGTGAGAACAAAATCATGGATACAATCCGG
ATGATGATTACTCAAGGCAATATGCAGCTCAAGGAGTTAGAAAAAACACTTGCTTTAGCAAAATCTTAACTATAGCATTATTCTGAAGGATTTTCAAAGT
CTCCATGTGTTTTGTTGCATTTAGGATTAACAATGGACAACACAAAGCCCAGTCTTACTATTTATATGTACAGTATTTGGTGATAGAGAGCAAAGGAAAA
ACACATCAGAACAGTTGCCTTAACACTGAAAAACATACCCTGCATTTTGAAAATGTTTATGGATGTCTCAGCAGTTCTTAAAAGAAGAAAAAAACCACTA
ACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTT
TAGGAGGCTGTGGTAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAGCATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGCT
TGGTGTGGTGGTGCATTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAAGTGGAGGTTGCAGTGAGCTGAGGTCG
TGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACAGTCTCTAAAAAAAAAAAAAAAAAACAACCCTGAGATTCACATTCACTAGAATGGCTGTAATTA
AAAAGAGAAATAATAATAAGTCTTGGTGAAGATGTACAGAAATTACAGAACCCTCATACATTGCTGGTGGGAATGTAAAATGGTGTAGCCACTTCAGAAA
ACAGACGGTCAGTTCCTCAAAAGATGAAACAGCTGCTGTATGAGTTAGCACTTCTACCCCATGCCCATAGCCATTATTTGGCACTAAAAAGAAACGAAGG
ACTTATATATACTAAACATGGATAAACCTTGAAAACGTTAAGTGAAAGAAGCCGGTCACAAAAGATCACATGATGATTCCATTCATACGAAATGTCCAGA
ATAGGCAGAAAGATTAGTGGTTGCCTAGGCTGGCTGTAGATGGAATGGAGTAACTGCTAATGGGTGTAGGGTTCCTTTTCAGGGTGATGAAAATATCCTA
CAGTTAGCTTGTGGTGTAGGCTGCACAACTCTTGAATATATTCAAATCCACTGAACTGTACATTTTAAATGTAAGGTATGAATTGTATCTCAATAAAGCT
GTTATTAAAAAACTCTTGAGGTGTAGGACTGAAAGTATACTGACACCAGGAGATACCCTGGAACTTTCTCGAAAAATCCTGCATTATCCCTGAGGGTTGT
TCAGGTACGTTCTTCAGATGTGTCATAGTTTGATAGAGAACTCATCAAAAAGATCACCACTGGGAATCTAGATCTTTGTTGAAAAGGGAAGAGAAAGAGA
AGCTTAATGAGCACATTGAAGCACTTACCAGAAAGAAGAGGGAAGACTTCTGGATGAAACCTCTGTGAGTACCTTAACATTCACATGGAAGTAGTAAAAA
TAAGATTCTGGGTGCAGTTCTCCAATGACAGGAAAAAAAACAAAGAGAATTTGAAGAATACGTCAGAGACAAATACATTACAACCAAAATTGACTTCAAG
GCACTTTTGAAGGAGATCAAATTTATAACAAAATAATTTAGTGAAAGTGAAAGCTTGTGGAAGATGTTGGAATCATCCATCCTGAAAATTGAAGTCTTCT
GTTTATCAACAGAACAGCTAAGAAGCTAATCTAAGAATGACCAGCACCTGAAAGATGTAGACAACATTTTGCAGAATGATAAATGGTATCCAGTACTGGA
CTGTGTCTGAGAGGCATCAACTGAATGTGGATGTTAATGACCTGGACTGTCAGGGTCCACCTCTACCTCCCAGAGCCTCAGAGCCCACAAGACAAAATAA
TTCTGAATACTGTTCCATGGGGGTAATCTACTAATTCAAAATGCCTGCCTGTGCCAATTTTCAGGTTTTTATGTAGATAAGTATTAGTTAACCTGTTGCA
AAATGATCTGACAAACAGAAGCATTTGTGACGTTTCTGAACAGAGAACACTTTGGAAATATTTTTTGTGTGACATGATTGATAGATACATGCTATCTCTA
GTAAATCTAAAATCTTGAAACTCAAAATCATCCTTTTATGGGTGTAGAAGTCAGTGATTTAATGATGCTCTTCCTAACAGTGGTGTGCATGGAAAGGTTT
TCATTAAAGAGCGTATGTGGTTTGCATTTGCAAGATTCAACTAGCACAGACTCCAAGAAAACCTAAGTTTTTTTGTTTTTTAAAGCAGGTAAGGCCGGGC
ACTGTGGCTTACACAAGTAATCCACACACTTTGGGAGGCTGAGGTGGGTGGATCACTTTAGGTCAGGATTTCGAGACTAGCTAGGCCACTAGCTAGCCTA
ACCTGGTGGCACGTGCCTGTAATTCCAGCTACTCAGGAGGGCTGCCTCATATTGAACCCGGGAGGCAGAGGCTGCAGTGAGCCGAGAACACACTACTGCA
CTACAGCCTGGGCGAAAGAGTGAGACTCTTGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00244728

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.