| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000448612 | WD repeat domain 27 | protein coding | ENST00000517431 | 518 | 290 | CDS | Trans | |
| ENST00000467462 | inter-alpha-trypsin inhibitor heavy chain family, member 4 | processed transcript | ENST00000517431 | 597 | 286 | noncoding | Trans | |
| ENST00000479069 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | processed transcript | ENST00000517431 | 584 | 286 | noncoding | Trans | |
| ENST00000553936 | gephyrin | nonsense mediated decay | ENST00000517431 | 654 | 289 | CDS_UTR | Trans | |
| ENST00000606818 | antisense | antisense | ENST00000517431 | 522 | 269 | noncoding | Trans | |
| TCONS_00001594 | lincRNA | novel protein coding | ENST00000517431 | 648 | 288 | UTR5 | Trans | |
| TCONS_00005323 | polypyrimidine tract binding protein 2 | novel protein coding | ENST00000517431 | 617 | 269 | UTR3 | Trans | |
| TCONS_00005324 | polypyrimidine tract binding protein 2 | novel protein coding | ENST00000517431 | 617 | 269 | UTR3 | Trans | |
| TCONS_00025805 | zinc finger, MIZ-type containing 1 | novel protein coding | ENST00000517431 | 651 | 287 | UTR3 | Trans | |
| TCONS_00033132 | dynein heavy chain domain 1 | novel protein coding | ENST00000517431 | 622 | 287 | UTR5 | Trans | |
| TCONS_00034643 | CD82 molecule | novel protein coding | ENST00000517431 | 650 | 285 | UTR3 | Trans | |
| TCONS_00038233 | protease, serine, 23 | novel protein coding | ENST00000517431 | 640 | 287 | UTR3 | Trans | |
| TCONS_00090929 | nucleoporin 93kDa | novel protein coding | ENST00000517431 | 617 | 270 | UTR3 | Trans | |
| TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR5 | Trans | |
| TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR5 | Trans | |
| TCONS_00109009 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 551 | 284 | UTR5 | Trans | |
| TCONS_00109009 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR3 | Trans | |
| TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR3 | Trans | |
| TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR3 | Trans | |
| TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 609 | 292 | UTR3 | Trans | |
| TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000517431 | 607 | 286 | UTR5 | Trans | |
| TCONS_00116334 | low density lipoprotein receptor class A domain containing 4 | novel protein coding | ENST00000517431 | 608 | 291 | UTR3 | Trans | |
| TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | ENST00000517431 | 656 | 285 | UTR5 | Trans | |
| TCONS_00152107 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | ENST00000517431 | 646 | 287 | UTR5 | Trans | |
| TCONS_00152126 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | ENST00000517431 | 646 | 287 | UTR5 | Trans | |
| TCONS_00152127 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | ENST00000517431 | 646 | 287 | UTR5 | Trans | |
| TCONS_00165341 | TTC28 antisense RNA 1 | novel protein coding | ENST00000517431 | 631 | 290 | UTR5 | Trans | |
| TCONS_00171146 | F-box and leucine-rich repeat protein 2 | novel noncoding | ENST00000517431 | 610 | 287 | noncoding | Trans | |
| TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000517431 | 632 | 287 | UTR3 | Trans | |
| TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000517431 | 620 | 280 | UTR5 | Trans | |
| TCONS_00199451 | solute carrier family 12 (sodium/potassium/chloride transporter), member 2 | novel protein coding | ENST00000517431 | 645 | 291 | UTR3 | Trans | |
| TCONS_00235708 | oxidation resistance 1 | novel protein coding | ENST00000517431 | 628 | 287 | UTR3 | Trans | |
| TCONS_00237103 | cathepsin B | novel protein coding | ENST00000517431 | 624 | 286 | UTR5 | Trans | |
| TCONS_00240045 | zinc finger protein 706 | novel protein coding | ENST00000517431 | 622 | 286 | UTR3 | Trans | |
| TCONS_00240046 | zinc finger protein 706 | novel protein coding | ENST00000517431 | 622 | 286 | UTR5 | Trans | |
| TCONS_00245543 | long intergenic non-protein coding RNA 963 | novel protein coding | ENST00000517431 | 620 | 268 | UTR3 | Trans | |
| TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000517431 | 640 | 286 | UTR5 | Trans |
>TCONS_00252827 (1118 nt)
ATGACATTTAGAGAGAGGCTGCTTCACAAAAACTTGCAGGAGCATTTTTCAAACCAAGACCTGGTTTTTCTGCTATGAACACCAAGTATAATAACAGAAA
GCCGCTCTACTCATCGACTGGAACATGCCTTATATAAACCTCGAAAAGGACTTTTTCACAGGGTACCTTCAGTGGTTGCCAATCTGGGCATGTCTGAACA
ACTAGGTTATAAAACTGTATCAGGTTCCTGTATGTCCACTGGTTTTAGCCGAGCAGTACAAACACACAGCTCTAAATTTTTTGAAGAAGATGGATCCTTA
AAGGAGGTACATAAGATAAATGAAATGTATGCTTCATTGTAAGAGAAATTAAAGAGTATATGCAAAAAAGTGGAAGACAGTGAACAAGCAGTAGATAAAC
TAGTAAAGGATGTAAACAGATTAAAACGAGAAATTGAAAAAAGGAGATGAGCCCAGATTCCAGCAGAACGAGAGAAGAGCATCCAAAAAAGACCCTCAGG
AGAACATTTTTCTTTGTCAAACATTATGGACCTTTTTTCCAGATTCTGAATTCTTCATGCATGTGTTATGTCTTTAAAAAAACAGACATGTTTCTAAAGG
TAGCTCTAACAACCACCACCATCTCGATGTAGTAGACAATCTGACCTTAATGGTAGAAAACACTGACATTCCTGAAGCTAGTCCAGCTAGTACACCACAA
ATGGTTAAGCATAAAACCTTAGACTTAGCTGACAGATGGCAGTTCAAGAGATGACGGCGGACGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA
CACAGTGAAACCCCATCTCTAATACAAAAAAATTGGCTGGGCGCGGTGGCTCACGACTATAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCAGGA
GGTCAGGAGACAGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTATTAAAATACAAAAAATTAGCCCGGCGTGGTGGCAGGTGCCTGTAGTCCCA
GCTGCTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCTGAGATCCTGCCACTGCACTCCAGCCTGGGCTACAGAG
GAATACTTCGACTCAGGAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.