| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000517637 | 568 | 274 | CDS | Trans | |
| ENST00000498535 | makorin ring finger protein 1 | nonsense mediated decay | ENST00000517637 | 524 | 268 | CDS | Trans | |
| ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | ENST00000517637 | 524 | 271 | CDS_UTR | Trans | |
| ENST00000620139 | melanoregulin | protein coding | ENST00000517637 | 513 | 266 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000517637 | 601 | 262 | UTR3 | Trans | |
| TCONS_00032151 | long intergenic non-protein coding RNA 959 | novel protein coding | ENST00000517637 | 515 | 268 | UTR5 | Trans | |
| TCONS_00080928 | SH3-domain GRB2-like 3 | novel protein coding | ENST00000517637 | 615 | 277 | UTR5 | Trans | |
| TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | ENST00000517637 | 633 | 277 | UTR3 | Trans | |
| TCONS_00119961 | ring finger protein 152 | novel protein coding | ENST00000517637 | 633 | 279 | UTR5 | Trans | |
| TCONS_00137691 | FOS-like antigen 2 | novel protein coding | ENST00000517637 | 611 | 278 | UTR5 | Trans | |
| TCONS_00221037 | POU class 6 homeobox 2 | novel noncoding | ENST00000517637 | 612 | 267 | noncoding | Trans | |
| TCONS_00230128 | solute carrier family 26 (anion exchanger), member 5 | novel protein coding | ENST00000517637 | 609 | 278 | UTR3 | Trans |
>TCONS_00230128 (462 nt)
AACAAAACAAAGACGCTGGGGAAACTTCACCAAGAGCCTCGGCAGCTCCAGAGCGACGGGAAACGAAAGATTTTGCTGGAGGAGCTTGCCAACAGCGATC
CCAAGTTAGCCCTCACTGGAGTTCCTATAGTACAGTGGCCAAAAAGGGATAAGTGTGGAATGGAAAAGAGAAGAAAGGGGCCGGGCATGGTGGCTCACAC
CTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACACCGTCTGTACCAA
AAATACAAAAATTAAGCCAGGCGTGGTGGCATGCGCCTATAATCCCAGCTACTTGCAAGGCTGGGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTT
GCAGTGAGCCGAGATCGCACCATTGCACTTCAGCCTGGGGGACAAGAGCGAAACTGTCTCAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.