Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000620139 | melanoregulin | protein coding | ENST00000518373 | 591 | 278 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000518373 | 570 | 280 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000518373 | 610 | 262 | UTR5 | Trans | |
TCONS_00190999 | zinc finger protein 721 | novel protein coding | ENST00000518373 | 606 | 278 | UTR3 | Trans |
>TCONS_00190999 (523 nt)
TTTGTCAAAGATGTTCCCAATAACCAATTACGGCATATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGAGGTACCCC
TAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGA
GGAAGCCATGCGTAGGATGGAGTCGCTCTCTGTCGCCCAGGCTGGAGTGCAATGGAGTGGTCTTGGCTCACTGCAACGTCCGCCTCCCGGATTCAAGTGA
TTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACACGCCACCATGCCTGCCAAATTTTTGTATTTTTAATAGAGACGAGTTTCACCATGTTG
GCCAGGCTGGTCTTGAACTGCTGACCTCGTGATCCGTGCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCAAAATATGT
TTTTAAAACATAAAACTCTTGAAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.