Detailed information on ENST00000518373

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000518373 591 278 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000518373 570 280 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000518373 610 262 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000518373 606 278 UTR3 Trans

Sequence

>TCONS_00190999 (523 nt)
TTTGTCAAAGATGTTCCCAATAACCAATTACGGCATATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGAGGTACCCC
TAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGA
GGAAGCCATGCGTAGGATGGAGTCGCTCTCTGTCGCCCAGGCTGGAGTGCAATGGAGTGGTCTTGGCTCACTGCAACGTCCGCCTCCCGGATTCAAGTGA
TTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACACGCCACCATGCCTGCCAAATTTTTGTATTTTTAATAGAGACGAGTTTCACCATGTTG
GCCAGGCTGGTCTTGAACTGCTGACCTCGTGATCCGTGCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCAAAATATGT
TTTTAAAACATAAAACTCTTGAAG

Expression



Full and truncated open reading frames discovered in TCONS_00190999

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.