Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000367590 | xenotropic and polytropic retrovirus receptor 1 | protein coding | ENST00000518961 | 557 | 250 | UTR3 | Trans | |
ENST00000424496 | sense_intronic | sense intronic | ENST00000518961 | 625 | 284 | noncoding | Trans | |
ENST00000463496 | aryl hydrocarbon receptor | nonsense mediated decay | ENST00000518961 | 551 | 295 | UTR3 | Trans | |
ENST00000552918 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000518961 | 626 | 280 | UTR3 | Trans | |
ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000518961 | 638 | 290 | UTR3 | Trans | |
ENST00000560870 | sense_intronic | sense intronic | ENST00000518961 | 527 | 269 | noncoding | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000518961 | 616 | 289 | UTR3 | Trans | |
TCONS_00009095 | xenotropic and polytropic retrovirus receptor 1 | novel protein coding | ENST00000518961 | 557 | 250 | UTR3 | Trans | |
TCONS_00010507 | SET and MYND domain containing 2 | novel protein coding | ENST00000518961 | 501 | 291 | UTR3 | Trans | |
TCONS_00020768 | processed_transcript | novel protein coding | ENST00000518961 | 609 | 298 | UTR5 | Trans | |
TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000518961 | 603 | 289 | UTR3 | Trans | |
TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000518961 | 638 | 290 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000518961 | 531 | 275 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000518961 | 613 | 283 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000518961 | 630 | 265 | UTR5 | Trans | |
TCONS_00149280 | Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} | novel protein coding | ENST00000518961 | 613 | 284 | UTR3 | Trans | |
TCONS_00160920 | protein tyrosine kinase 6 | novel protein coding | ENST00000518961 | 601 | 295 | UTR5 | Trans | |
TCONS_00161482 | BTB and CNC homology 1, basic leucine zipper transcription factor 1 | novel protein coding | ENST00000518961 | 606 | 295 | UTR3 | Trans | |
TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000518961 | 612 | 290 | UTR3 | Trans | |
TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000518961 | 612 | 297 | UTR3 | Trans | |
TCONS_00190799 | sorting nexin 25 | novel protein coding | ENST00000518961 | 603 | 289 | UTR3 | Trans | |
TCONS_00194652 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000518961 | 605 | 290 | UTR5 | Trans | |
TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000518961 | 605 | 290 | UTR5 | Trans | |
TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000518961 | 642 | 288 | UTR5 | Trans | |
TCONS_00251977 | G protein-coupled receptor 82 | novel protein coding | ENST00000518961 | 556 | 281 | UTR3 | Trans | |
TCONS_00253055 | uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) | novel protein coding | ENST00000518961 | 2975 | 1215 | UTR3 | Trans |
>TCONS_00253055 (3299 nt)
TAAAATTGAACCCATCAAATTGTATACTTTAAACATGTGCCATGCTTTTTATGTATCAATTATACCTTAATAAAGCAGTTTTTAAAACTTGAATTCATGG
AAATAAAGTGCCGTAGAAGAGTTTTTGAAAGAGTGTTATAAATGCTTGACTACACCATTAATTATGCTTATGTTTGGAGAAACTTGGTTTAATACCTCTT
ATAAGCATGTCTGGACAAGAATTAGCCATGTTGTAATGGACTGTATATGTCCCGATGTTACCAAGGTTTCTTTCCAAAGTTATTTTTTTATAAATTGAAA
TATGCCTTGACTATGTGGAAAGTACTATCCTTATGAAAAGTTTCTTTTGTTTACATTCTTACAAATTTTTTCTTCTTTTAAAGTGTTAGTGACAAACAGT
CTGCGGTAACTGAATCCTCAGAGGGTACAGTATCCTTATTGAGGTGAAGTAAATTGACGTTTTTCTTCTTTGTCTTTCAAATCTTTGATTGAAGCAATTC
ATGCAGACCTAATAAAAACTACCACATAAATGGTACAATTGAAAGAATATCTCAGGGTCCTAGTTAGCCCAACAGATAGTCACGACTCTGAGACATCTTG
AAATTCCAAACTGTAGAGACCTGCTCTGAGACTGGGTTGTTTCACATTGTTTCTACAAAGCCATTATTGGAATACACATATAGGGAGTTCTTGAGCTTAA
AACAGATGTTTAGTAAACACTTCTCTGTCACAGAAACAAAGATATGATACTGGGGCAGGAAGGGGATGGCAATTACATTTCTAATGAATGCCCCATGCCA
ATTTTATGAAAGTTACTTGAAAAACTTTATTTGATCTAATAGAATCGCTGTGACAGACAATACAACCTGTCCCGAGGGCAGAAAGTCTGCATGAATGATT
TCTAACATAGAGCAGTTGGGATCACAAGTGGAACCATGGGGAGGAGGTGGCTGACTTCATGTGGAGGAGGTGATTGGACATGAGGAACTGAGAGGCCAAG
ATGGTATATGAATTGTCTGTGAGAACACTGAAATAATTCATAATAGCAGCACTTAGGTGTAGAGAAAGATCTGTGAATGATGAAGAAGTGCTTGGAAGGA
TGGTAAATGGCTGTGAAGAATGATTGAAGGTGATACATCTCAGTGGCATGAATCCTCAAGGCTGAAGTTTCTATGGAAGCAGGATCTTGAAAGTGGCATT
CATTAGGAAATGAAAACTGCTGTCTCTGGAGTCCTATAGTTTATGGAGGGTGGAAGATTAAGCCAATCTCTACTTGAGAAGGCTACCAAGGAGAGAAACA
TTGTCCCCAGGGGAAAGCTAGATTTTAGACAAGGCAAAGAGCGGAGAGGAATGGGTGAAGAGATTGAGAATGACATTCTAGAAAGGACAATAGAAAGTCT
TAGGAAGGAGGGACAGAGGGGAAGAGAGAAAGGATGGCTGGTCACCTAGAGTATCTATAGGGATAAAAGTATAGCTAAAATAACCTACATTTTAGGTGGA
GATAATACAGCTGCCTAAGCTTAGGTGAACTGCTTTTTGAATCTTAGTTTGCTCCTTCATAAAATTGGATTAATATAATACCAATTTGGCAGAGTTTTCA
AAAAAAATGATGCCACATCCTGTGTTTCCAAACAGCCTTACCTTTCAAAACTCTTTTTGGAAGCTGTAAAGATAATCAAGTGATACCTGCCATTATGTAA
AGGAATTTTGGAATCCGTCTTTGGGGAAATAAAAGCCATAAGAGAGAATGAAAGCTAATACTTTGTAGTTTAAGGATTTTTTTCCTTGATGTATCTAATT
GGAAGGCCGAAAGAGTCTTGTCTTTTCTTTTTTTTGCCTGCTTCTTCTGAGACATCAAAAAACATCTTGATTTCTGCGGAGTAGATGAGATGGAGAAAGA
TGAGACAGGCAACAGAAATCTTAAGAGGCCACAGGTTAAGATGGGGTACTAAGCAGGGAGAGCACCAAAGGAAGTAGGCCAAAGTATTAATAGAAGATCC
TAGAACAGATTAAGGCAAATCATTTACCTGTTTTCCATTGCCTTACTATCTTTCTGGAGCCAATTACAAACTTTCCTGTTTTATTTTAGGTCTCACAAGA
ATCTTTTCTTATCTAAGTTGCAACATGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGAAGAGTAGGAACTCCTCAAAGTACAAAAAAGAAAAAAGA
AAGCAGAAGAGCCACTGAAAGCAGAATACCTGTTTCAAAGAGTCAGCCGGTAACTCCTGAAAAACATCGAGCTAGAAAAAGACAGGCATGGCTTTGGGAA
GAAGACAAGAATTTGAGATCTGGCGTGAGGAAATATGGAGAGGGAAACTGGTCTAAAATACTGTTGCATTATAAATTCAACAACCGGACAAGTGTCATGT
TAAAAGACAGATGGAGGACCATGAAGAAACTAAAACTGATTTCCTCAGACAGCGAAGACTGATTGTGTTTGTAAAAGCTTGATGAAAGGACAGTTAAGTA
TTTTGATCACTGCATTTTGTTTGAAACTTGTGTCATTGATGTAATTTAAAACTTTTGTTTAAAGCATTACAGTATTTTTCTGTGACCATCAATTAATGAG
GGTTTGTGCTACCAGAGTTAAAGCATATGCTATCATTGTATTCTTTAAGAACCTTATTTTGATAAAATGTAAATTTGTTGAACCCTGCCACATTTAGTAT
CCCCACCCCCAAATCCTGTTCCAATGAAAAAATTAAAACCTGATACGAAAAAAAAAAAATTCCAGTTAACCTATTTTGTGTCTGTAGGCTGACCTCAACC
CTGTAACGTAACCCATTAAAATGAATTTCTTTTTTTTTAAGACAGAGTTTCTCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATTTCAGCTCACTGCA
ACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCACGCCCAGCTAATTTTTGTATTTTT
AGTAGAGGCGGGGTTTCACCATGCTGGTCAGGATGTTCTCCAACTCCTGACTTCATGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGACGT
GAGCCACTGCGTCCTGCCTAAAATGAATTTTCTAGATGATTGAATAACAGTAGTCCTTTGATAGAAGATAATGACTTGGTTTATGGCCTTAATATACTAC
TTAATTACTTAAGATGTTTATTAATAGAATGATAAATGTACAGAGTAACCTATAAGCATGACATACTTTTGCTTTCAGTAGTTTCATGTAAAGAAAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.