Detailed information on ENST00000518961

lncRNA-RNA interactions

Number of interactions: 26

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000518961 557 250 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000518961 625 284 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000518961 551 295 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000518961 626 280 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000518961 638 290 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000518961 527 269 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000518961 616 289 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000518961 557 250 UTR3 Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding ENST00000518961 501 291 UTR3 Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000518961 609 298 UTR5 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000518961 603 289 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000518961 638 290 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000518961 531 275 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000518961 613 283 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000518961 630 265 UTR5 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000518961 613 284 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000518961 601 295 UTR5 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000518961 606 295 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000518961 612 290 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000518961 612 297 UTR3 Trans
TCONS_00190799 sorting nexin 25 novel protein coding ENST00000518961 603 289 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000518961 605 290 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000518961 605 290 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000518961 642 288 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000518961 556 281 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000518961 2975 1215 UTR3 Trans

Sequence

>TCONS_00253055 (3299 nt)
TAAAATTGAACCCATCAAATTGTATACTTTAAACATGTGCCATGCTTTTTATGTATCAATTATACCTTAATAAAGCAGTTTTTAAAACTTGAATTCATGG
AAATAAAGTGCCGTAGAAGAGTTTTTGAAAGAGTGTTATAAATGCTTGACTACACCATTAATTATGCTTATGTTTGGAGAAACTTGGTTTAATACCTCTT
ATAAGCATGTCTGGACAAGAATTAGCCATGTTGTAATGGACTGTATATGTCCCGATGTTACCAAGGTTTCTTTCCAAAGTTATTTTTTTATAAATTGAAA
TATGCCTTGACTATGTGGAAAGTACTATCCTTATGAAAAGTTTCTTTTGTTTACATTCTTACAAATTTTTTCTTCTTTTAAAGTGTTAGTGACAAACAGT
CTGCGGTAACTGAATCCTCAGAGGGTACAGTATCCTTATTGAGGTGAAGTAAATTGACGTTTTTCTTCTTTGTCTTTCAAATCTTTGATTGAAGCAATTC
ATGCAGACCTAATAAAAACTACCACATAAATGGTACAATTGAAAGAATATCTCAGGGTCCTAGTTAGCCCAACAGATAGTCACGACTCTGAGACATCTTG
AAATTCCAAACTGTAGAGACCTGCTCTGAGACTGGGTTGTTTCACATTGTTTCTACAAAGCCATTATTGGAATACACATATAGGGAGTTCTTGAGCTTAA
AACAGATGTTTAGTAAACACTTCTCTGTCACAGAAACAAAGATATGATACTGGGGCAGGAAGGGGATGGCAATTACATTTCTAATGAATGCCCCATGCCA
ATTTTATGAAAGTTACTTGAAAAACTTTATTTGATCTAATAGAATCGCTGTGACAGACAATACAACCTGTCCCGAGGGCAGAAAGTCTGCATGAATGATT
TCTAACATAGAGCAGTTGGGATCACAAGTGGAACCATGGGGAGGAGGTGGCTGACTTCATGTGGAGGAGGTGATTGGACATGAGGAACTGAGAGGCCAAG
ATGGTATATGAATTGTCTGTGAGAACACTGAAATAATTCATAATAGCAGCACTTAGGTGTAGAGAAAGATCTGTGAATGATGAAGAAGTGCTTGGAAGGA
TGGTAAATGGCTGTGAAGAATGATTGAAGGTGATACATCTCAGTGGCATGAATCCTCAAGGCTGAAGTTTCTATGGAAGCAGGATCTTGAAAGTGGCATT
CATTAGGAAATGAAAACTGCTGTCTCTGGAGTCCTATAGTTTATGGAGGGTGGAAGATTAAGCCAATCTCTACTTGAGAAGGCTACCAAGGAGAGAAACA
TTGTCCCCAGGGGAAAGCTAGATTTTAGACAAGGCAAAGAGCGGAGAGGAATGGGTGAAGAGATTGAGAATGACATTCTAGAAAGGACAATAGAAAGTCT
TAGGAAGGAGGGACAGAGGGGAAGAGAGAAAGGATGGCTGGTCACCTAGAGTATCTATAGGGATAAAAGTATAGCTAAAATAACCTACATTTTAGGTGGA
GATAATACAGCTGCCTAAGCTTAGGTGAACTGCTTTTTGAATCTTAGTTTGCTCCTTCATAAAATTGGATTAATATAATACCAATTTGGCAGAGTTTTCA
AAAAAAATGATGCCACATCCTGTGTTTCCAAACAGCCTTACCTTTCAAAACTCTTTTTGGAAGCTGTAAAGATAATCAAGTGATACCTGCCATTATGTAA
AGGAATTTTGGAATCCGTCTTTGGGGAAATAAAAGCCATAAGAGAGAATGAAAGCTAATACTTTGTAGTTTAAGGATTTTTTTCCTTGATGTATCTAATT
GGAAGGCCGAAAGAGTCTTGTCTTTTCTTTTTTTTGCCTGCTTCTTCTGAGACATCAAAAAACATCTTGATTTCTGCGGAGTAGATGAGATGGAGAAAGA
TGAGACAGGCAACAGAAATCTTAAGAGGCCACAGGTTAAGATGGGGTACTAAGCAGGGAGAGCACCAAAGGAAGTAGGCCAAAGTATTAATAGAAGATCC
TAGAACAGATTAAGGCAAATCATTTACCTGTTTTCCATTGCCTTACTATCTTTCTGGAGCCAATTACAAACTTTCCTGTTTTATTTTAGGTCTCACAAGA
ATCTTTTCTTATCTAAGTTGCAACATGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGAAGAGTAGGAACTCCTCAAAGTACAAAAAAGAAAAAAGA
AAGCAGAAGAGCCACTGAAAGCAGAATACCTGTTTCAAAGAGTCAGCCGGTAACTCCTGAAAAACATCGAGCTAGAAAAAGACAGGCATGGCTTTGGGAA
GAAGACAAGAATTTGAGATCTGGCGTGAGGAAATATGGAGAGGGAAACTGGTCTAAAATACTGTTGCATTATAAATTCAACAACCGGACAAGTGTCATGT
TAAAAGACAGATGGAGGACCATGAAGAAACTAAAACTGATTTCCTCAGACAGCGAAGACTGATTGTGTTTGTAAAAGCTTGATGAAAGGACAGTTAAGTA
TTTTGATCACTGCATTTTGTTTGAAACTTGTGTCATTGATGTAATTTAAAACTTTTGTTTAAAGCATTACAGTATTTTTCTGTGACCATCAATTAATGAG
GGTTTGTGCTACCAGAGTTAAAGCATATGCTATCATTGTATTCTTTAAGAACCTTATTTTGATAAAATGTAAATTTGTTGAACCCTGCCACATTTAGTAT
CCCCACCCCCAAATCCTGTTCCAATGAAAAAATTAAAACCTGATACGAAAAAAAAAAAATTCCAGTTAACCTATTTTGTGTCTGTAGGCTGACCTCAACC
CTGTAACGTAACCCATTAAAATGAATTTCTTTTTTTTTAAGACAGAGTTTCTCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATTTCAGCTCACTGCA
ACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCACGCCCAGCTAATTTTTGTATTTTT
AGTAGAGGCGGGGTTTCACCATGCTGGTCAGGATGTTCTCCAACTCCTGACTTCATGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGACGT
GAGCCACTGCGTCCTGCCTAAAATGAATTTTCTAGATGATTGAATAACAGTAGTCCTTTGATAGAAGATAATGACTTGGTTTATGGCCTTAATATACTAC
TTAATTACTTAAGATGTTTATTAATAGAATGATAAATGTACAGAGTAACCTATAAGCATGACATACTTTTGCTTTCAGTAGTTTCATGTAAAGAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.