Detailed information on ENST00000520365

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000489959 carcinoembryonic antigen-related cell ad... processed transcript ENST00000520365 505 184 noncoding Trans
ENST00000582217 myosin ID processed transcript ENST00000520365 551 185 noncoding Trans

Sequence

>ENST00000520365 (569 nt)
ATGCCTCACCCTGCTTTGGCTCGCGCACGGTGCGCGCACCCACTGACCTGTGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGG<br />AAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCAGGCAACCTCTTTTC<br />TTTATAAATTACTCAATCTCGGGTATTTCTTCATAGCAGCATGAGAATGGACTAATACAAAGTCCTTTGGCTGGAGGCAACAGGAAAAATTCTGACTATC<br />ATTTCCCATGCTACCCCTCACCTTTCAAATCCTTTACAATATGGGGAGCAGGAGAAAGGCAGATCTTACTTGAGAGGACCGTGAGGGGAGCAAGGTCGAG<br />AGTCCACATGGAACCCCAAAAACTAGGAGAGCTAGAACAAGGACATTTGATACAAAAAGAAAAATTACTGTCATGTGATGTGTGATCCATGATACCGTCA<br />TAGTTTTGTTTTGCTGTGCTCCACCTTCATACCTTCGCCTATGTTAGAACTTCTGAGAAGCTGAAGCAT

Expression



Full and truncated open reading frames discovered in ENST00000520365

In silico ORF/peptide predictions
>peptide 1 (68 aa)
MPHPALARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSGNLFSL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT126953 (Evalue: 0)