| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000378004 | Rho GTPase activating protein 26 | protein coding | ENST00000521561 | 569 | 228 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000521561 | 620 | 227 | UTR3 | Trans | |
| TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000521561 | 577 | 228 | UTR3 | Trans | |
| TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000521561 | 678 | 302 | UTR3 | Trans | |
| TCONS_00088441 | antisense | novel protein coding | ENST00000521561 | 670 | 275 | UTR3 | Trans | |
| TCONS_00103261 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000521561 | 682 | 301 | UTR5 | Trans | |
| TCONS_00103262 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000521561 | 682 | 301 | UTR5 | Trans | |
| TCONS_00108999 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109000 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109009 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109012 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109013 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00109014 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000521561 | 615 | 228 | UTR5 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000521561 | 597 | 229 | UTR3 | Trans | |
| TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | ENST00000521561 | 608 | 229 | UTR3 | Trans | |
| TCONS_00227594 | GLI family zinc finger 3 | novel protein coding | ENST00000521561 | 558 | 214 | UTR3 | Trans |
>TCONS_00227594 (569 nt)
ACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTG
TATTTTTAGTAGAGACGGGGTTTCATCGTTTTAGCCGGGATGGTCTCGATCTCCTCCTGACCTCGTGATCAGCCCGCCTCGGCCTCCCAAAGTGCTGGGA
TTACAGGCGTGAGCCACCGCGCCCGGCCTACTTCTTTTTTTTTTTGAGACAGGGTTTCGCTCTGTTGCCCAGCCTGGAGTGCAGTGATGCGATCTAGGCT
TTGAGCCTGCTCTCAGGCTCATAGGCCATTCTGAAGAAACAAACATACAAATAGGCTGCTGTAGTAGAGTAGATGTTGTGAAAAGTTTATAACCCTGGCT
GAGGAGGAAGTGAGCAACGCTGGCTGGGGTCTTCAGAAAAGAATTCCCAAAGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGC
CACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.