Detailed information on ENST00000522081

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000522081 531 270 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000522081 525 284 CDS_UTR Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000522081 600 279 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000522081 507 280 UTR3 Trans

Sequence

>TCONS_00082423 (2332 nt)
AGTGCTAGGTATCTCCTATCTTCCTAAATCCCCTGAAGTAAATAGTATCCCACTTTACAGATGACGAAACTGAGCATTTTGTGTTTTAGTAACTTCCCAT
AGCCAGTGAGGTGTCAGGTTTCAAACCATTCACTCCATTCGTTCATACTCTGCGGCTTATTTCCCATGCCATTTTCTGGCGTCTGGCCCGGGTTAATCAT
TTCCATACCTGCTTGTGTTAGTCTCCTAGGGTTGCCATAACAAAGTACTACAAACTGGGTAGCTTAAAACAACAGAAGGACTCCCACAATTCTGGAAGCT
AGAAGTCTAAAAGTCAGGTGTTGGCAGAGGCACTTTCCCTCTGAAGGTTCTGGGGAAGAATCTTTCTTTACCTCTCCCTGGCTTCTGATGGTTGTCAGCA
ATCTTTGGCATTCCCTGGCAGGCAGCTTCATCACTCCTCCAATTTCTGCTCCATCACCACATGATCTTCTTTCTTTTGTGCCTTTGTCTTTACATGGCCT
TTTTTGTCGTTGTTTTTTGAGGCAGAGTCTTGCTCCGTTGCCCAGGCAGCAGTGCAGTGGCATGATCTTGGCTCACTGCATCCTCTGCCTCCTGGGTTCT
ACCAATTCTCATGCCACAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGTACATGGCCATGTTATAAGGACACTAGTCATTGGATTGAGGGCCTTTCTA
ATCCACCATGACCTCATCTTAATTAATTATATCTACAAAGATACTTTTTTTAAAAAAAAAGGTAAGATGTCTATGAGGTCACATTCTGAGGTTCTGCGGG
GATATGAATTTGGGGGGGCACTGTTCAGCCCAGCACACTTTCTGGTCATAACTCTGACCTTTCACCTTCTGTGTGATGTAATCTTTCGCACTTTTCCACT
CCTGTGGTGCATCCCTGTGTGGTCACAAGGAAGTTGATACCAGTGTCTTGGTGGATTTGAGTAAGGGACCGTCTACTATGCTAAGGCATTGGTAATGGAA
AGGTAGCCTTAAAACTCTGACTTTTCTGTCCATTCTACACCAGACTGTATGACTGGCTACACCTCAGAACTTATCTTGAACGTGATACGTTTTGTCTATA
TTGATACATCTTCATGTAGAGAATAACCTTAGTTTCTTTATTTCTTAGAAAATCTCTCTACCTCTGTATTATCATTTGAACTCCAGTTCCATTGCTTCCT
TTACATTTCTATAGACATTTTGTTAATTCTTGTTCATCGTTAATTAGAATTTGCTAATTATGAAGAGAATAACCAAGACAGAGTGGTCAGATGTTCAGGT
GAATTTGGCCTTCTAGGGTGTGTGGCTGGTGCATTCTTTTATTTTCCAGTCTTTAAAATGTGATTATTTGTTTCTCAGATAAGTTTGATTATGCAAACTG
TGATAAGTAAAAAAAATACCCCATTACTTCATATAGTTCTGACAACTTATGCTGTAACACATTTAAATGAGTAATTTTGTTTTGAAATAGGTTGGCCTTG
GGGAGGCACTATTAGAGGCTGAAACTATTGAAGAACAAGAATCTCCAGTGAACTGCTTTAGAAAATTATTTGTTTGTGATGTCCTTCCTCTAATAATTAA
CAACCATGATGTTCGATTACCTGCCAATTTATTGTATAAGTACTTGAACAAAGCAGCTGAATTTTATATCAATTATGTCACTAGGTCTACTCAAATAGAA
AATCAGCATCAAGGCGCCCAGGATACATCTGATTTAATGTCACCTAGCAAACGTAGCTCTCAGAAGTACATAATAGAAGGGCTGACGGAAAAATCATCCC
AGATCGTGGACCCTTGGGAGAGGTTGTTTAAGATTTTGAATGTTGTTGGAATGAGATGTGAATGGCAGATGGATAAAGGAAGACGGTAATAAATAGCTTA
TTTCCAGAATTGCCTATTGATTCTTTTGGATCCTTATAAAAACAAAATCATGCTTTTTAAATCTGTGTAATGCGTAGGTATAGTTTTTGGGCAAATTTTG
TGACACTCAATGCAAAAGAGGATGGTTTTTCATTTTATCAAAACATTTCTGACTGGGCACAATGGCTCACATCTGTAATCCCAGTGCTTTGGGAGGCTGA
GGTGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTAGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGAGGTGA
TGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGAGAAAATCACTTGAACCCAGGACGTGGAGGCTACGATGAGCCAAGATCACACCACTGCAAT
CCAGCCTGGGTGACAGAGTGAGACCCTGTCTCT

Expression



Full and truncated open reading frames discovered in TCONS_00082423

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.