Detailed information on ENST00000525082

lncRNA-RNA interactions

Number of interactions: 18

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262134 lysophosphatidylcholine acyltransferase 2 protein coding ENST00000525082 551 308 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000525082 532 303 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000525082 535 304 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000525082 508 307 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000525082 515 286 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000525082 549 305 UTR3 Trans
TCONS_00017972 transcribed_unprocessed_pseudogene novel protein coding ENST00000525082 503 306 UTR3 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000525082 529 302 UTR3 Trans
TCONS_00075339 latent transforming growth factor beta binding protein 2 novel protein coding ENST00000525082 550 307 UTR3 Trans
TCONS_00090805 lysophosphatidylcholine acyltransferase 2 novel protein coding ENST00000525082 551 308 UTR3 Trans
TCONS_00159938 zinc fingers and homeoboxes 3 novel protein coding ENST00000525082 559 312 UTR3 Trans

Sequence

>TCONS_00159938 (1231 nt)
GCGACTTCGGCGGCGCCACGAGAGCGGGCAGCGGAGGAGATTGACGTGAGTGAATTCAGATATAACTCAAGCTTGTTAGAGGGCTTTTTAAAAATAAAAA
GTTGATTCCGTGCAAGAGAGCAAGTTACTGCTGCTTACCGTTCAGAGACTTACAGGTGCTTGCCTGCATTGCAATAAAGGACTCATTTATTGAGCAAGAC
TTATATTTATCTCTTCATTTTGGAGAGCCTAATAAACTGTTATTACAGTTTCTCTACTGACTTTCAAAAGTTTTGAAGTTTGAAAGACCTTTGCAATTAA
AACAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGAGGCCCTGTGAAACCCACTGGTGGCCCTG
GAGGAGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATGGCACTCAGCAGCAAGCACAGAGTATGACCACCAC
TATTAAGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTAC
TTGAACGGCTAGACCTGAAGAAGGACAATATACAAGGTTAGTTGAATAAAAGTTTGTTTTTAAACTAAAAATGGGAGTTTCAGCCTTGGAGCCATGTGTA
GAAGATACTCTTTTTTTAGTCAGAATTTACATTATCTAAAATTTGTATTCTTTCTTTTCAGGTTTTTTCTTTTTTTAGCCTGATGATGGTCTTTTTATTA
AAAATGATTCCCAGCTTTTTAGAGATTTCTAGTTTTAAGAGTATTCTTATATGATACACACTTGTGACAGCATTCCAGTGAGACAGGAAAAATAAGTATT
AGTGCCCTATAGGTAGGAAAGCTGAGGCTGGGCACGGTGCCTCACAGCCTGTAATCCCAGCACTTTGGGAGGTCAAAGTGGGTGGATCACCTGAGGCCAG
ATATTTAAGACCAGCCTGGCCAACATTGCGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCTGGGCATGGTGGCGCACAACTGTAATCCCAGCTACT
CAGAAGTCTGAGGCACGAGAGTCACTGGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGAC
TCTCAACTCAAAAAAAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00159938

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.