Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000262134 | lysophosphatidylcholine acyltransferase 2 | protein coding | ENST00000525082 | 551 | 308 | UTR3 | Trans | |
ENST00000375120 | OTU deubiquitinase 3 | protein coding | ENST00000525082 | 532 | 303 | UTR3 | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000525082 | 535 | 304 | CDS | Trans | |
ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | ENST00000525082 | 508 | 307 | CDS_UTR | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | ENST00000525082 | 515 | 286 | UTR3 | Trans | |
TCONS_00014134 | collagen, type XVI, alpha 1 | novel protein coding | ENST00000525082 | 549 | 305 | UTR3 | Trans | |
TCONS_00017972 | transcribed_unprocessed_pseudogene | novel protein coding | ENST00000525082 | 503 | 306 | UTR3 | Trans | |
TCONS_00059486 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059487 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059488 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059489 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059491 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059493 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059495 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00059497 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000525082 | 529 | 302 | UTR3 | Trans | |
TCONS_00075339 | latent transforming growth factor beta binding protein 2 | novel protein coding | ENST00000525082 | 550 | 307 | UTR3 | Trans | |
TCONS_00090805 | lysophosphatidylcholine acyltransferase 2 | novel protein coding | ENST00000525082 | 551 | 308 | UTR3 | Trans | |
TCONS_00159938 | zinc fingers and homeoboxes 3 | novel protein coding | ENST00000525082 | 559 | 312 | UTR3 | Trans |
>TCONS_00159938 (1231 nt)
GCGACTTCGGCGGCGCCACGAGAGCGGGCAGCGGAGGAGATTGACGTGAGTGAATTCAGATATAACTCAAGCTTGTTAGAGGGCTTTTTAAAAATAAAAA
GTTGATTCCGTGCAAGAGAGCAAGTTACTGCTGCTTACCGTTCAGAGACTTACAGGTGCTTGCCTGCATTGCAATAAAGGACTCATTTATTGAGCAAGAC
TTATATTTATCTCTTCATTTTGGAGAGCCTAATAAACTGTTATTACAGTTTCTCTACTGACTTTCAAAAGTTTTGAAGTTTGAAAGACCTTTGCAATTAA
AACAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGAGGCCCTGTGAAACCCACTGGTGGCCCTG
GAGGAGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATGGCACTCAGCAGCAAGCACAGAGTATGACCACCAC
TATTAAGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTAC
TTGAACGGCTAGACCTGAAGAAGGACAATATACAAGGTTAGTTGAATAAAAGTTTGTTTTTAAACTAAAAATGGGAGTTTCAGCCTTGGAGCCATGTGTA
GAAGATACTCTTTTTTTAGTCAGAATTTACATTATCTAAAATTTGTATTCTTTCTTTTCAGGTTTTTTCTTTTTTTAGCCTGATGATGGTCTTTTTATTA
AAAATGATTCCCAGCTTTTTAGAGATTTCTAGTTTTAAGAGTATTCTTATATGATACACACTTGTGACAGCATTCCAGTGAGACAGGAAAAATAAGTATT
AGTGCCCTATAGGTAGGAAAGCTGAGGCTGGGCACGGTGCCTCACAGCCTGTAATCCCAGCACTTTGGGAGGTCAAAGTGGGTGGATCACCTGAGGCCAG
ATATTTAAGACCAGCCTGGCCAACATTGCGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCTGGGCATGGTGGCGCACAACTGTAATCCCAGCTACT
CAGAAGTCTGAGGCACGAGAGTCACTGGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGAC
TCTCAACTCAAAAAAAAAAAAAAAAAAAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.