Detailed information on ENST00000527861

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded inter... protein coding ENST00000527861 586 306 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000527861 564 301 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000527861 525 304 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000527861 540 306 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000527861 503 303 CDS Trans
ENST00000512143 platelet-derived growth factor receptor,... protein coding ENST00000527861 515 290 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000527861 519 296 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000527861 536 301 UTR3 Trans
TCONS_00051899 RNA binding motif, single stranded inter... novel protein coding ENST00000527861 586 306 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000527861 656 300 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000527861 656 300 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000527861 656 300 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000527861 564 301 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000527861 553 299 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000527861 553 299 UTR3 Trans

Sequence

>ENST00000527861 (925 nt)
CTTTGTAACCTCCTTTTACAAATGAGGAAACTGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTCAAGGCAGGAGAATCACTTGA<br />ACTCAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGACCCTGTCTCTACAAAAAATTTAAAGATTAGCTGAGCATGGTGGTACATGCCTGTAGTCCCA<br />GCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCCAGGAAGTCAAGGCTGCAGTGAGCTGTGATCATGCCACTGCACTCCAGCTTGGATAACAGAG<br />TGAGACCCTGTCTCCAAAAAAAAAAAGAAAGAAAAAGAAAACAAGTCATGGAGCTAGTAAGTGCCCAAGAGAACAAGAATAAACCTAGATCCGTGGGACT<br />CCAAGCCTGTGCGCGCTCCATGCTTGCTTTTTCCACCACACCACGTTAACACAATTTCCTCCTTCCATGAGACCCCAGGGGAAAGGGGCACCTGAGAAGC<br />CCTCGTGGCACCCTCCCAGGTTGTTTCCACGGCTACTACAGTAAGAAAGTGTTGCTGGGGGAAGGTCAGCTCTCTGGCCCACGCCTTCCACCTGTTTCTG<br />CTGTGTTCTTTCCTCAGGGATCCCAACGGCTTCAATGACTGGACCTTCTCCACTGTGCGATGCTGGGGGGAGAGAGCCCGAGGGACCTACAGGCTTGTCA<br />TCAGGGATGTCGGGGATGAGTCATTCCAGGTCGGCATCCTCCGGCAATGGCAGCTGACCCTATATGGCTCTGTGTGGAGTGCAGTAGACATCAGGGACAG<br />ACAAAGGCTGTTAGAGAGTGCCATGAGTGGAAAATACCTGCACGATGACTTCGCCCTGCCCTGCCCACCGGGGCTGAAAATTCCTGAGGAAGATGGTTAC<br />ACCATCACCCCCAACACCCTCAAGG

Expression



Full and truncated open reading frames discovered in ENST00000527861

In silico ORF/peptide predictions
>peptide 1 (59 aa)
MPLHSSLDNRVRPCLQKKKERKRKQVMELVSAQENKNKPRSVGLQACARSMLAFSTTPR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT024391 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q16549|PCSK7_HUMAN (Evalue: 1.0E-63)