| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000262031 | RNA binding motif, single stranded interacting protein 2 | protein coding | ENST00000527861 | 586 | 306 | UTR3 | Trans | |
| ENST00000263955 | serine/threonine kinase 17b | protein coding | ENST00000527861 | 564 | 301 | UTR3 | Trans | |
| ENST00000375120 | OTU deubiquitinase 3 | protein coding | ENST00000527861 | 525 | 304 | UTR3 | Trans | |
| ENST00000473091 | UBA domain containing 2 | processed transcript | ENST00000527861 | 540 | 306 | noncoding | Trans | |
| ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000527861 | 503 | 303 | CDS | Trans | |
| ENST00000512143 | platelet-derived growth factor receptor, alpha polypeptide | protein coding | ENST00000527861 | 515 | 290 | CDS_UTR | Trans | |
| ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000527861 | 519 | 296 | UTR3 | Trans | |
| TCONS_00014134 | collagen, type XVI, alpha 1 | novel protein coding | ENST00000527861 | 536 | 301 | UTR3 | Trans | |
| TCONS_00051899 | RNA binding motif, single stranded interacting protein 2 | novel protein coding | ENST00000527861 | 586 | 306 | UTR3 | Trans | |
| TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000527861 | 656 | 300 | UTR3 | Trans | |
| TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000527861 | 656 | 300 | UTR3 | Trans | |
| TCONS_00147106 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000527861 | 656 | 300 | UTR3 | Trans | |
| TCONS_00153158 | serine/threonine kinase 17b | novel protein coding | ENST00000527861 | 564 | 301 | UTR3 | Trans | |
| TCONS_00225245 | family with sequence similarity 115, member C | novel protein coding | ENST00000527861 | 553 | 299 | UTR3 | Trans | |
| TCONS_00225248 | family with sequence similarity 115, member C | novel protein coding | ENST00000527861 | 553 | 299 | UTR3 | Trans |
>TCONS_00225248 (924 nt)
CTTTGTAACCTCCTTTTACAAATGAGGAAACTGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTCAAGGCAGGAGAATCACTTGA
ACTCAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGACCCTGTCTCTACAAAAAATTTAAAGATTAGCTGAGCATGGTGGTACATGCCTGTAGTCCCA
GCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCCAGGAAGTCAAGGCTGCAGTGAGCTGTGATCATGCCACTGCACTCCAGCTTGGATAACAGAG
TGAGACCCTGTCTCCAAAAAAAAAAAGAAAGAAAAAGAAAACAAGTCATGGAGCTAGTAAGTGCCCAAGAGAACAAGAATAAACCTAGATCCGTGGGACT
CCAAGCCTGTGCGCGCTCCATGCTTGCTTTTTCCACCACACCACGTTAACACAATTTCCTCCTTCCATGAGACCCCAGGGGAAAGGGGCACCTGAGAAGC
CCTCGTGGCACCCTCCCAGGTTGTTTCCACGGCTACTACAGTAAGAAAGTGTTGCTGGGGGAAGGTCAGCTCTCTGGCCCACGCCTTCCACCTGTTTCTG
CTGTGTTCTTTCCTCAGGGATCCCAACGGCTTCAATGACTGGACCTTCTCCACTGTGCGATGCTGGGGGGAGAGAGCCCGAGGGACCTACAGGCTTGTCA
TCAGGGATGTCGGGGATGAGTCATTCCAGGTCGGCATCCTCCGGCAATGGCAGCTGACCCTATATGGCTCTGTGTGGAGTGCAGTAGACATCAGGGACAG
ACAAAGGCTGTTAGAGAGTGCCATGAGTGGAAAATACCTGCACGATGACTTCGCCCTGCCCTGCCCACCGGGGCTGAAAATTCCTGAGGAAGATGGTTAC
ACCATCACCCCCAACACCCTCAAGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.