Detailed information on ENST00000528133

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus rec... protein coding ENST00000528133 580 243 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000528133 520 245 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000528133 539 257 noncoding Trans
ENST00000512404 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000528133 539 257 noncoding Trans
ENST00000560870 sense_intronic sense intronic ENST00000528133 510 245 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000528133 571 250 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus rec... novel protein coding ENST00000528133 580 243 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich ... novel protein coding ENST00000528133 543 234 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000528133 513 246 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000528133 606 258 UTR5 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000528133 507 234 UTR3 Trans

Sequence

>ENST00000528133 (905 nt)
AGTGGCGTGATCTTGGCTCACTGCATCCTCCGCCTCCCGATTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCATGTGCCACCA<br />CACCCAGCTAATTTTTGTATTTTTAGTAGGGACAGGGTTTCACCACGTTGGTCAGGTTGGTCTTGAGCTCCTGACCTCGTGATCTGCCCACCTTGGCCTC<br />CCAAAGTGCTGGGATTACAGGCGTGAGCCGCTGTGCCCGGCTATTTTTTTTTTTTTTCTTGGAGTTAATAACTGCTCTGTTTGTTCACTTACTTGGTCTT<br />CTATATATACCTGTTTCTTCCCAAATAGGGAGCCCAGAATTTAAAAAACTAATTATTTGTTGACCACAGCAAACTAATTATTGTTTCCCAATGGTATTCT<br />AAGTTTTCTCTTTAGTTATCCATACTATTATTATTTCTTCTGTCCTTTTTTCACTGTTACACCAGAGTGGAGGTTGCAGTGAGCTGAGTTCATGCCACTG<br />CACTGCAACCTGTGCGACAAGAGTGAGCTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGTTCAAATGGTCATATTTGTAGTCTGTTTTTAAAATCAAGTA<br />ATGGAATAAATAGGTTTTTAGAGATAATGGGTTGGAGGCAATTTGGAAGGTTTATTTAGGTTGTCAGAAGACTAGTGTTGAGGGTGATGGTTTGTGGGGA<br />TTTAAAAAATCCTCAGACTATTTGAAATTAGGGTAGTAACAAGTCCCAGGATATATGTATGAGTTTAACATCTATGTAGAGATTAAAATGTAGAAGCATG<br />TCTAATCAACTTTTTTTGGCTGTATAATGTCCTATAACTTAGCTGTTAACTGCTTAACTCACTGCTGAGTACATATTGAACGTGCAATATATATTTTATT<br />TCTGG

Expression



Full and truncated open reading frames discovered in ENST00000528133

In silico ORF/peptide predictions
>peptide 1 (55 aa)
MPLHCNLCDKSELCLKKKKKKKSSNGHICSLFLKSSNGINRFLEIMGWRQFGRFI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT023387 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 5.0E-16)