| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000367590 | xenotropic and polytropic retrovirus receptor 1 | protein coding | ENST00000528133 | 580 | 243 | UTR3 | Trans | |
| ENST00000424496 | sense_intronic | sense intronic | ENST00000528133 | 520 | 245 | noncoding | Trans | |
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000528133 | 539 | 257 | noncoding | Trans | |
| ENST00000512404 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000528133 | 539 | 257 | noncoding | Trans | |
| ENST00000560870 | sense_intronic | sense intronic | ENST00000528133 | 510 | 245 | noncoding | Trans | |
| ENST00000620139 | melanoregulin | protein coding | ENST00000528133 | 571 | 250 | UTR3 | Trans | |
| TCONS_00009095 | xenotropic and polytropic retrovirus receptor 1 | novel protein coding | ENST00000528133 | 580 | 243 | UTR3 | Trans | |
| TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000528133 | 543 | 234 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000528133 | 513 | 246 | UTR3 | Trans | |
| TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000528133 | 606 | 258 | UTR5 | Trans | |
| TCONS_00240685 | metastasis suppressor 1 | novel protein coding | ENST00000528133 | 507 | 234 | UTR3 | Trans |
>TCONS_00240685 (904 nt)
AGTGGCGTGATCTTGGCTCACTGCATCCTCCGCCTCCCGATTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCATGTGCCACCA
CACCCAGCTAATTTTTGTATTTTTAGTAGGGACAGGGTTTCACCACGTTGGTCAGGTTGGTCTTGAGCTCCTGACCTCGTGATCTGCCCACCTTGGCCTC
CCAAAGTGCTGGGATTACAGGCGTGAGCCGCTGTGCCCGGCTATTTTTTTTTTTTTTCTTGGAGTTAATAACTGCTCTGTTTGTTCACTTACTTGGTCTT
CTATATATACCTGTTTCTTCCCAAATAGGGAGCCCAGAATTTAAAAAACTAATTATTTGTTGACCACAGCAAACTAATTATTGTTTCCCAATGGTATTCT
AAGTTTTCTCTTTAGTTATCCATACTATTATTATTTCTTCTGTCCTTTTTTCACTGTTACACCAGAGTGGAGGTTGCAGTGAGCTGAGTTCATGCCACTG
CACTGCAACCTGTGCGACAAGAGTGAGCTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGTTCAAATGGTCATATTTGTAGTCTGTTTTTAAAATCAAGTA
ATGGAATAAATAGGTTTTTAGAGATAATGGGTTGGAGGCAATTTGGAAGGTTTATTTAGGTTGTCAGAAGACTAGTGTTGAGGGTGATGGTTTGTGGGGA
TTTAAAAAATCCTCAGACTATTTGAAATTAGGGTAGTAACAAGTCCCAGGATATATGTATGAGTTTAACATCTATGTAGAGATTAAAATGTAGAAGCATG
TCTAATCAACTTTTTTTGGCTGTATAATGTCCTATAACTTAGCTGTTAACTGCTTAACTCACTGCTGAGTACATATTGAACGTGCAATATATATTTTATT
TCTGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.