Detailed information on ENST00000529551

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00156217 antisense novel protein coding ENST00000529551 514 461 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000529551 563 526 UTR5 Trans

Sequence

>ENST00000529551 (896 nt)
AGGCTGAAGGAAGGCAAGGGCTGAAACGGAGACAGGATGCTACTGCAGTACTCCACGTGAAGGCTGGTGGTCGCTTGGACTGAGTCAGAACAGGGAAACT<br />GATGGGAAGTTGTCGGAGAGTAAATATTTCCAACTACAGTCTGGTGATGGAGTCTGACGCAGGAACCTTCTTACCCACTGGGCTGCAATTCACTGGCAGT<br />GAAAAGGCCAGGGCCATCATGGAGGAGGTTATGAGCCTGCTGCAGCCCCTCAATATCACTCAGGTCCTGAGCCATGGAGAAGGGACAGACATCAACTTTT<br />GGATCCAAGCTGGAGTGCCTGGTACTTCTGCATAACTACCCAGTAGAGAAGGATCCTTTCACAAAAGGTGTGGGAAAACTATACTACAAGCCTGCAGTAA<br />CCAAAATGGCATGTTACGGGTACAAAAACAGACACATAGGCCAATGGAACAGGTTAGAGAAGCCAGAAATAAAGCCACACACCTACAACCATCTGATCTT<br />TGGCAAAGCCAACAGTAAAAAACAATGGGGAAAGGACTCCCAATTCAATAAATGCTGCTGGGATAACTGACTAGCCATATGCAGAAGATTGAAACTGGAC<br />TCCTTCCTCTCACCATACATAAAAATCAACCCAAGATTGATTAAAGACTTAAGTGTAAAACCTAAAATTATAAAAATCCTACAAGAAAACCTTGGAAATA<br />ACATTCTGGACATTGGCCCTGGCAAAGACTTCATGATGAAGACTCCAAAAGCAATTGTAACAAAAACAAAAATCGACAAGTGGGACCTAATTAAAGAGTT<br />TCTGCACAGTAAAAGAAACTGTCAACAGAGTAAATAGACAACCTACAGAATGGAAGAAAATATTTGCAAACTACGTATCTGACAAAGGTCTAATAT

Expression



Full and truncated open reading frames discovered in ENST00000529551

In silico ORF/peptide predictions
>peptide 1 (98 aa)
MEKGQTSTFGSKLECLVLLHNYPVEKDPFTKGVGKLYYKPAVTKMACYGYKNRHIGQWNRLEKPEIKPHTYNHLIFGKANSKKQWGKDSQFNKCCWDN

>peptide 2 (77 aa)
MGSCRRVNISNYSLVMESDAGTFLPTGLQFTGSEKARAIMEEVMSLLQPLNITQVLSHGEGTDINFWIQAGVPGTSA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT127868 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 9.0E-63)