Detailed information on ENST00000531658

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000531658 534 274 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000531658 525 304 UTR3 Trans

Sequence

>ENST00000531658 (4258 nt)
ATTTTTAAATAAAAACTGAAAATGAATTTGGGTATTTGGTGTGCTGAAAAGTGAAATTTTTGCCTATTTAAAACTGACCCTAATCTTGGACATTAGTAAT<br />AAAAGGCACATATTAATAAAAGACACATTGACCTAGATTATGTTTAACAAAACTTTAAGTTATTTAAATTATGCTAACACAGCATATGTAGCACATTTTA<br />GAAATTCATAGATCTTTTATTTTTCTAGTGTTAAACAATTACTTCAAATTGATTTGTATTGCTACATAAGGCAAAAAACAATTCCTGAACTTTGCAGAAT<br />GGAAAAATATTTCAACTGCCACATTTACTCTTTTAAAACTGAGAGCTTTAAAGCAGGAGCTCCCAATCCCCGGTACCCATCCCTGGCCTGTTAGAAACTG<br />GACCACATAGCAGGAGGTGAGTGGCACGCAAGCCAGAGAAGCTTTATCAGTATTTACAGCTGCTCCCAATGGCTTGTATGGCCACCTGAGCTCCGCATCC<br />TATCAGATCATTGGCAGCATTAAATTCTCATAGGAGCATGAACCCTATTGTGAACTGTGCAAGCCAGGGATCTAGGTTGTGCCTCCTTATGAGAATCTAA<br />TGCCTGATGATCTGAATTGGAGCTGAGGTGGTAATGGGGAGTGGCTGCAAAAACAGATTAACATTAGCAGAGAGGCTTGACTGCACAGAGACCGTAATCA<br />ATCAACTGCTTGCAGACTCATATCAAAACCCTCTCAGTGAGTGGCAAGTAACAAGCTGCATCTAGTGGCAGGTTTTAAGTCAGAATCTGACATTTAATCT<br />GCATGTGGCCTGCCCATTACTTATTTACCACTTCCATCCATGTCTCTTTCCTGCACTGTGCATTTGTCTCAGTCACAGTTTTGGTAAGCCCACAAGCTAA<br />CCCTAGCCAAAATGAGTAAAAAAACAAACGTCCTTGGAGAGCTTCTTTGAAAAGGGGGAAAGACCCAATGATGAGACAGCAGAAGACTCTAATACTGCCA<br />ACAAAGAGAAAGTGGCATTTAAAAGAAAATATCAAGAGTCCTACTTAAATTGTAGGTTCATTGCAATAGGTGATTCACATTCTCCAAACCTGCTTTGTCT<br />AATATGTGATGACCAGCTATCCAGAAAAGCCATGAAACCTTTAAAAGTGCTTCACCACATGGAGACCAAACACCCTGCATTAAAAGACAAGCCTTTGGAG<br />TTTTTCAAAAGAAAAAATCGTGAACGCAAAGAACAGAAGTAATTATTGAAGGCCACCACTTCATCAAATGTGTCTGCAGTGAGAGCATCATTCTTAGTGG<br />CTAATCACATTGCTAAAGCTAAGAAGGCCTTTACTACTGGTGAAGAGTTGATCCTGCCTGCTGCTAAGGACATCTGTTGTGAACTCTTAGGAGAGCCTGC<br />AGTTCAAAAGGTGGCACATGTTCCTCTTCTGGCTAGCACCATAGCTAGATGAATTAATAGAGGATATGAGGCACAGTTGTTAGAATTAATGAGTCACTGT<br />GGTACCCAATCCAGGTTAATGAGTCTACCAGTGTTGACAGCAAGGCAACAATGCTTGTTTTTGTGTGATACATTTTTCAGGAGGATGTGCATGAGGATAT<br />ATTATGTGCACTTTTGCTTTCAACCAACACCACAGCTGCAGAACTATTCAAGTCTTTAAATACATATCAGGAAAACTGAATTGGTCATTTTGTATCGATA<br />TATGCAGGGATGGAGCAGCTGCCATGACTGGACGGCTTTCTGTTTTCACTACTCAGGTCAAAGAGCTTGCTTCTGAATGTGAGTCTGTGTACTGTGTCAT<br />CTGTAGAGATGCTGGCTAGTTGGAAAATGCCACCTGAACTTACCATTTTGTAGGATGTGCTTAAAATTTTCAACCACATTAAAGTACATGCCCTTAATTC<br />ACATCTGTTCATGTAGCTCTGTGAGAAGATAGACACAGAGCACACGTCTTCTCTTATACACAGAAGAGAGACGGCTTCCTAAAGGTAGATCACTGGCCAC<br />TGTTTTTCAGTTACAATAGCTGCTCCAGAGATTTCATTTTAGAAAAAGTCACCACTGGCAGCACATTTCGTTGACACAGAATTGGGTCACAAAATTGCTT<br />ACTTGGCCAGGCATGGTGGGTCACGCCTGTAATTACAGCACTTTTGGGAGGCCAAGGCAGGCAGATCACTCAAGGCCAGGAGTTTGAGACCAGTCTGGCC<br />AAAGGGGAGAAACCTCGTCTTTACTAAAAAATACAAAAATTAGCTAGGCATGGTGGCACATGCCTATAATCCCGGCTACTCGGGAGGCTGAGGCACGAGA<br />ATCACTTGAGCCTGGAAGGCAGAGGTTGCAATGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAAGAGAGCGAGACTCCCTCGAAAAAAAAAAAAA<br />AACTTGCTTACTTGTGTGACATATTCAATCTGTCACCTCAGGGGAGAACAAAACTGTGTTCAAGTTGGCAGATAGAGTGGCTGCATTCAAAGCCAGACTA<br />GTATTATGGGGGCCACAAGTGAACATTGGGATTTTTTGACATGTTTCAAACATTAGCAGAGATTTTAAAAGAGACTGAGCCAGGACCTTTTTTCTCCCAG<br />CTGGCACATGATCACCTATCTCAGCCTTCAAAGAGTTTGAGTATTATTTTCCAGCCACGAAAGAGCCCCGAACTGGGAAGGAATGGATTCACAACCCATT<br />TGTGAATAAGCCAGGTGAATCGACTTTGTTCATGCTAGAAGAGGATCAGCTGCTTAAGATCACAAATGATGTTGCCCTTAAAAGTATGTTTGAGACAACT<br />TCACATCTCCATACATTCTGGATTAAAGACAAAGTGGAACATCCTGAGATTGCCACGAAAGCACTGGAAAGCCTGCTTCCATTTCCAACCTCCTGTCTTT<br />GTGAAACAGGGTTTTCTGTAGTGACAGCAGCCAAACAAGATTACAGAGTAGACTGGACATAAGCAACACACTTAGGGTGTCACTGTCTCCCATCACCCCT<br />AGATGGGACCGTCTAGTTGCAGGGAAAACAAGCTCAGGGCTCCCACTGCTTCTACATTATGGTGAGTTGTACAATTATTTCATTATATATTACGATGTGA<br />TAATAATAAAGTACACAATAAATGTAATACACTTGAATCATCTCAAAACCACCACCACCCCCCTCCATGGAAAAATTGTTTTCCACAAAACCGGTGCCTG<br />GTGCCAAAAAGGTTGGAAACTGCTGCTTTAAACTTTTAAGTTGCTCTGATAAACTTGATAAGCAAAGAAAGGCATAAAGAAGAGTCAGTACATGACCATT<br />TTATTTAGCCATTTGCTGAACAGAAGTGCCTAGCTTTTTTCACTGTTTTTGTTCAAAGATAGATAATTCTGTTTGTTAGAGAGTTTTTATTAGGTGACTA<br />GAAAAAAATCTTTCAGGATAACATCTACTTATTATAAGTAAGCTAAAACATTTAATACCCAAAGTGCTTAGTAATAAATATTTATGCTATCTCAACATCA<br />GGCATTTTATTTTCTATTAGGTAACCACCTATGGCATAAATTCTCAAAAGTCATAGTAAAATTAGTCACAATTAGATAAATCAGCCCTGAGTATAATAGC<br />ATCTGTATTATGGGTTTTTGTGTAAATTATTAATTTGACTGAAACATAACTAAAGTATCCTGGACATGCAGGGGAAGAAGACAAGAAAATTAATGAAGAA<br />CTGGAGTCTCAATATCAGCAAAGTATGGACAGTAAATTATCAGGAAGATATCGGCGACATTGTGGACTTGGCTTCAGTGAGGTAGAAGACCATGATGGAG<br />AAGGTGATGTGGCTGGAGATGATGATGATGACGATGATGATTCACCTGATCCTGAAAGTCCAGATGATTCTGAAAGCGATTCAGAGTCAGAGAAAGAAGA<br />ATCTGCTGAAGAACTCCAAGCTGCTGAGCACCCTGATGAAGTGGAGGATCCCAAAAACAAAAAAGATGCAAAAAGCAATTATAAAATGATGTTTGTTAAA<br />TCCAGTGGTTCATAACTCCCAAACGCTTAGTCTTTGTATTAAAAGTAAGCCTTATTGTTACAATGCACAGTGGAGGACTGCTTATAGAGCACAGACCTTT<br />GTATTATAATTTTTAAAAAGGCCCTTTTAAATAATTACAAAGAGTGTTTGCTTTCAAATGCCATGGGTTACACTTTTATGGGCATGACTATAACCATTTT<br />TGTAAAGAGTAAGAGTTGTATAAAATAAGAAATAAATACAGTACTCAACTTCCTTTCA

Expression



Full and truncated open reading frames discovered in ENST00000531658

In silico ORF/peptide predictions
>peptide 1 (96 aa)
MDSKLSGRYRRHCGLGFSEVEDHDGEGDVAGDDDDDDDDSPDPESPDDSESDSESEKEESAEELQAAEHPDEVEDPKNKKDAKSNYKMMFVKSSGS

>peptide 2 (76 aa)
MLEEDQLLKITNDVALKSMFETTSHLHTFWIKDKVEHPEIATKALESLLPFPTSCLCETGFSVVTAAKQDYRVDWT

>peptide 3 (71 aa)
MCTFAFNQHHSCRTIQVFKYISGKLNWSFCIDICRDGAAAMTGRLSVFTTQVKELASECESVYCVICRDAG

>peptide 4 (65 aa)
MMEKVMWLEMMMMTMMIHLILKVQMILKAIQSQRKKNLLKNSKLLSTLMKWRIPKTKKMQKAIIK

>peptide 5 (56 aa)
MSHCGTQSRLMSLPVLTARQQCLFLCDTFFRRMCMRIYYVHFCFQPTPQLQNYSSL

>peptide 6 (56 aa)
MSRDHATALQPGQESETPSKKKKKLAYLCDIFNLSPQGRTKLCSSWQIEWLHSKPD

>peptide 7 (54 aa)
MFQTLAEILKETEPGPFFSQLAHDHLSQPSKSLSIIFQPRKSPELGRNGFTTHL

>peptide 8 (51 aa)
MMLPLKVCLRQLHISIHSGLKTKWNILRLPRKHWKACFHFQPPVFVKQGFL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT024901 (Evalue: 3.0E-100)

Best hit to Swiss-Prot:
sp|Q5RD18|SMAP_PONAB (Evalue: 4.0E-30)