Detailed information on ENST00000532572

lncRNA-RNA interactions

Number of interactions: 37

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000532572 623 291 UTR3 Trans
ENST00000407780 inducible T-cell co-stimulator ligand protein coding ENST00000532572 624 297 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding ENST00000532572 596 282 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000532572 551 291 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000532572 611 258 UTR3 Trans
ENST00000620340 ribosomal protein S6 kinase, 90kDa, polypeptide 6 protein coding ENST00000532572 620 295 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000532572 563 294 UTR3 Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding ENST00000532572 500 294 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000532572 641 291 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000532572 641 291 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000532572 603 293 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000532572 623 296 UTR5 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000532572 623 296 UTR5 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding ENST00000532572 642 291 UTR5 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000532572 652 291 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000532572 652 291 UTR5 Trans
TCONS_00056991 epidermal growth factor receptor pathway substrate 8 novel protein coding ENST00000532572 503 285 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000532572 638 293 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000532572 661 291 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000532572 667 291 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000532572 530 291 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000532572 643 292 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000532572 622 293 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000532572 521 297 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000532572 610 294 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000532572 610 294 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000532572 609 294 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000532572 663 290 UTR3 Trans
TCONS_00163485 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) novel protein coding ENST00000532572 512 298 UTR3 Trans
TCONS_00163488 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) novel protein coding ENST00000532572 512 298 UTR3 Trans
TCONS_00163891 inducible T-cell co-stimulator ligand novel protein coding ENST00000532572 624 297 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000532572 616 283 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000532572 602 294 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000532572 645 293 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000532572 637 290 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000532572 637 290 noncoding Trans
TCONS_00240832 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 novel protein coding ENST00000532572 671 286 UTR3 Trans

Sequence

>TCONS_00240832 (5322 nt)
AATGAGACCTGTGTGCCAACCCTGGCCTAGTCCTCATGCCCCCACAACTGTGAAGCGAGAGGGCTCAACAGTTTCGAATTCAATTCAACCACCACCTCCT
GAATACCAACTAGGTTCCAGGACCTGGCTAGAAGCAGAGACACCAGGACAGAAAAGACAGTGTTCTGCTTTCATGGAGTTCACAGAAGAGTCGAGGAGAC
ACAGCTGGATCCTCCCTGTTTACCCCAGTGGATGCTAAATGCTTTGGTGAAGAGGAGACATCCCTGCACAAAGCAGAGCTGTGGATTCTCTGACCTCCTT
GAAGACTCTCTTCTGAGCTGCAGTGGACATTTGCCATATTTTTATTAATGGGTGTCTGTCATCAAATCTCCCTCTGTAAGGGTTGGTCACTGTTGTGGCT
TCTCTCGATGTGAGGTCGGACTCACCTTCCATATCAAAAGTGGACAAAATCACACTCACACTCTCTTGTTCACACATAAACACACAACCCTGGCACAATC
TGAGGGTCAGTAACTGACTTTGGCTCAGCCCACCAAGTGGTCTTTCCCTGAAGTGTGAATCTCAGGGAAGCAATACAAAAACAGGCAGGGGGTGGGTGGC
TACCTCTGGAGACAGCTGGAGGTCGTCCTTTCAAAAGCAGGCTGGCGGGCACGCTGACCAAACTACTCCTGCCAAGGAGCCATTGCTGTGGTTCCTTTGG
ACTGGACTTCTGACTCTCCCCTAATTTCTACTCATTTCTAAGGTTAATTCTCTTTACTCTCCAACCACTCCAATACATTTCCTTCCATTTATGTTCTCTA
GAGTCTGTTTTCATTGCTGACACCTAAGGTGGTGCATAATTATAAGCCAGCGTGATTTCATTTCCTATCTGAAGCCTTCGAAAAAAATGGCTCTCAAGCA
GTATCTCAGACACCCAAATCCAAGGCTTTACTTTGGTGGCCATGGAAAGACACCTGAATGGGTGGGCGTGGGAATAGGGTAAGAGAAGTAGAAAAGAGGA
AGGGAAAAGAGAAAGTACTGCATATTTCATACCTACTATAGTCTAGGACTGAGGATACAGCAATGATCAACATAGGCAGAGGCTCTAACAGATGCCAGGA
GCCAGCTAGGCATTTGTCCGGCTATCTTATGATAATATTATAGGGAGGGAGGTGCTCCCATACCCCAAGTGGGAAGAGTGCGGCTCAGTGAGGCTGAGAA
ACTTGCCGTGGGTCACACAGCAGATGACTATTGGAGCTGGAATCTGAACCAGATCTCATTCCTACCATATCTGCTCTTTCCACTACATAAATTTGTTAAA
CAATGGTGGGTAAACCATGCACCTTTTTTTCTTTTCGTATTTTGATTTCAGTGTTGTATCCATGATTTGGAACGAGCCCACCTGAGCCTAATGATGCGAC
GAGATCATTGGATTATATATGTATTTACTTTAAAAACACAAGGTAGAAAACTTTACTGAGTCCATGAAAAGAAAAGCTGGAGACACGTCAAAGCCTGTTT
TGATTTAAGTGGAATAGATCCAGCTTGAGTGTAAATTCGAGACTGTGTTTGCTTGTGTCACACTCTATTTTTCAAATTACTTTCATATGTCCTGTTTCAT
TTATTTCCCCCAGTTCGGAATGGGAAAACTGAGGCCTGGGACTTGAAATAACAGATGTATGTTTGTACAGCAAATCATCATGAGAGCCAAAACTCAAACC
CATACTCTCTCACCGAACCCCACTGCTTCTTTCAGCACACAATAATTATTATTATGCCAAGTAAGTTTAACAAGGTGACTTGGATCGATTCATTCTGATG
ATTTGAGTTGGCTCCTGGGATCATCTGGGTAAATATTAGGCCCACATCTCTTTCCAAACATATTCCATCTCTCTCTCTCTCTTTGGTTTTTTCTTTTTTC
TACATTTTCACCTCTGCTCCCTCATCATACCTCCCTCCCTTTCTCTGTTGAACTCCTCCCCTTCTCTTCTTTCCTCCCTTCCTCTCATCCTCTCACCCAC
AAAAACATTTGTTTGTCTTACATAGGGATAGTGTCATGTGACTGGGTGGCTGAAAGGAGAAGTATCTTTTAAGCTCCTGGAAGCAGAATATTTTCTTATG
GATTTTTTATTGTTTGGATTGTTTTGCCAGGCTAATGAAAGAAGACTCTGAGGTCCCCTTATCTCAGGCCAACTAGAGGATGCCTTCAAGTTTTTGTTTT
TCTTCCCAAGCTGGTTCCTTACAAATGCATCCAGAAGGTCATTCCCAGGTCCCCAAGATAGTGGTGGGTAATCAATCACATCCAGGACATCAGCATCACA
GCAGATAAGCTCATGCATGGGAGGATTTGGGAAAGGAGAGAGGGGATCCTAAACTATCCCTGAACCATGTGCTCCAGCAAAGGCAAGTGGAGGGATTACT
TTTTCTAGGAGTTCACTGGGACAGCCACAAGTATATTCTAGCTCCAATGACCATTCTTCCCTTTTGATTTTTGACTCAAAACAAATAAAAATACACATAC
ATAAAATCCTTAAACATTTCCTATATAATCTGATAATTGCAATTCAGCAAGCAATAAAGATTGTGTGATTGTGTTTAACAGCTCCAAGGGATGGGTCCAC
ACAGGGCCCCCAGGCAATAACTAATCCCTCTGAAACAAACAGAGAGGACTCCAGACCTGGCTTTGCCAAGGACAAGTTTTGTAAGCTTATTTAAGTCACC
TGACTTCTCTAGGCCTCAGATTCCTCAGCTATAAAATAATGAGCTAGTTTATTATTTCAACCAATGCTTATTAAACATCCACTTTGTGTCAGGCTTTGTG
CAAGAAGCTGGAAATATTTTTAAAGTATAGACACAGTATCTGTTCTCAGGGTCTCAGTGTTTAATGCGGGAAAAGATGCATCATAAGAGAAAAGTGCTGT
GGACGGCAAAGGCAAAAACAACTCAGCCCAGGAGCTTATCTTTAGGATTCTTCCCAACCCCAAAAGTCTACGTGTATGGCATTTTTTTGTCTGTTCATTT
TGTTTTGGTTGTCTTTTCACATGAATGTTATTTCATTCTTTCTTGACTAGTTGTTTTCAAATCATTGTTGCATTGTTGTCATTATCATCCATTACCAATT
ACTAAACACATACTGTTACCCCAAATGTTGTAATTACCCCAACTGTTGGTAATTACCCCAATGACTCTAAAAGTTAGACATTATAATCACTATTTTTTAT
ATAATAACACTGAAGCCCAGAGAGGTTAAGTAACTTACCCAAGCTCACATCGCTAGAAAGTTACGGAACTGGGATTGGAGTTGACCCCTGCCAACTCCAA
AGTACATGCTCTTTCTACTACTTGGTGCTGCCTTAGGTATATGTAGCCACTTAGGACAAACATCATTTACAGGAGCAGGTGTGATATAAAAATATGAGGC
CCTTTGTTCAAATATTATTGAAAATTTCAAGATAGCAACAGCAAAGCATTAAACAAAGCACAAGGCCTGTCTAAGCACAGGGCTCTGAATGACTGCCCAT
GTTGCAAACCCAGGAATCCAGCCCTGCCAGCCACAATTCAGTTTGCAATGGCATCTCCCACTGAAGCAGAAAAGCTTCATAGCAATTTGCAGGCCCAGAT
CACACTCGCAGAATGTTTCAGTGATCATGCTTCACATGTAGGATTTCTGGCACTACCCAGAGGGTTCATTGTGAACCACCTGGCAGGACTTGGGGGCTCT
GTGTGGTGGCTTTTTCAGAGTAGCCCTGGCACCTAACCTAAAGAATATTAATATCATTTCTGGTAATGCCAATTACTTTATTTTTTTTTGAGATGGAGTT
TTGCTCTTGTTGCCAGGCTAGAGTGCAATGGCACAATCTCAGCTCACCACAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGT
AGCTGGGATTACAGGCATGTGACACCACACCTGGCTAATTTTGTATTTTTGGTAGAGACAAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGA
CCTCAGGTGATCCGACCACCTCGACCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACAGCGCCCGGCCAGCCAATTACTTTTTTTAATGTGGGGAAAG
GTATATAATCTTGCTGAAAGAGTTTTGCTCCGTGTGATGGTTCATACCTGTAATCCCAGTATTTTGGGAGGCTGAGGCAGGAGGATGGCTTGAGCCCAAG
AGTTTGAGACCAGCCTGGGAAACAGAGACCCCTGTCTCTACAAAAAATACAAAAAATTAGCCAGGCATGGTGGTATGTACCTGTAGTAGGAGGCTGAGCT
GGGAGGATCACTTGAGCCTGGGAGGTTGAGGCCACAGTAAGCCATGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGTAAAGAAAAAAAAAAAAAAA
GAGTTCTGGTCATACCCTTACACCCTTACTCTTACATTTAGAACATTTAGAACATTAATGCTGCATAAATGGAACATGTCCAAAAGCCTCTTAGGATGCA
AGCCTCTTTTGAAATTGCAAACTGGGACCAGTACATGTGCCCTAATAGAGGGCAGTAGGAAAAAAAGCAAGAGCTTTGCAGCTGCTGGATTACGAACCTC
TCTACTGAGGCACTAACTCCTATTAAGGTGTTAGCTCCTACTGACCCAGCAGAGGCTGAGTAAAGATTGTCATTTTGGTCAATGATTCTTAATCAGTGGT
ATTTAATCTTTTGAGATCACAGACCCCTTCTTTGAAAAGTATGAACCATCTCCCCAGAAAAAAGACAGGTGTATGTAAAATATTCTTGCATTCAATTGTA
GACTCTCTGCCTTAGCCCTAGATTTTTTAAAACCATATTTTAAAGCATGGCTCCCCTAATTATAGAATTGTCAGAGGCGTCTGAACCAGAGCAACTCCAT
CTTGAGTAGGGGCTGGGTAAAATAAGGCTGAGACCTACTGGGCTGCATTCCCAGACGGTTAGGCATTCTAAGTCACAGGATGAGATAGGAGGTCAGCCAA
GATACAGGTCATCAAGACCTTGCTGATAAAATAGGTTGCAGTAAAGAAGCCAGCTGAAGCCCACCAAAACCAAGATGGCCATGAGAGTGACCTCTGGTTG
TCCTCACTGCTACACTCCCACCAGCACCATGACAGTTTACAGATGCCATGGCAATGTCAGGAAGTTACCCTATATGGTCTAAAAGGGGAGGCATGAATAA
TCCACCCCTTGTTTAGCATATAATCAAGAAATAACCATAAAAATAGGCAACCAGAAGCCTTCTGTCAGTGGAGTAGCCATTCTTTTATTCCTTTACTTTC
TTAATAAACTTGCTTTCACTTTA

Expression



Full and truncated open reading frames discovered in TCONS_00240832

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.