Detailed information on ENST00000533149

lncRNA-RNA interactions

Number of interactions: 56

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding ENST00000533149 600 269 UTR3 Trans
ENST00000358157 sphingosine-1-phosphate receptor 3 protein coding ENST00000533149 617 275 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000533149 528 252 UTR3 Trans
ENST00000375846 sphingosine-1-phosphate receptor 3 protein coding ENST00000533149 617 275 UTR3 Trans
ENST00000591226 tropomyosin 4 retained intron ENST00000533149 610 264 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000533149 548 265 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000533149 618 269 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000533149 618 269 UTR5 Trans
TCONS_00008758 flavin containing monooxygenase 4 novel protein coding ENST00000533149 604 263 UTR5 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000533149 528 252 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000533149 632 265 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000533149 632 265 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000533149 632 265 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000533149 632 265 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000533149 625 264 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000533149 600 268 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000533149 609 264 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000533149 629 264 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000533149 630 282 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000533149 630 282 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000533149 630 282 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000533149 628 264 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000533149 624 260 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000533149 624 260 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000533149 509 256 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000533149 509 256 UTR3 Trans
TCONS_00088780 synaptotagmin XVII novel protein coding ENST00000533149 606 265 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000533149 616 264 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000533149 616 264 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000533149 616 264 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000533149 616 264 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000533149 541 261 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000533149 618 266 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000533149 622 270 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000533149 622 270 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000533149 626 265 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000533149 653 265 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000533149 605 264 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000533149 628 259 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000533149 600 264 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000533149 633 268 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000533149 633 268 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding ENST00000533149 610 268 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding ENST00000533149 610 268 UTR3 Trans
TCONS_00192159 amyloid beta (A4) precursor protein-binding, family B, member 2 novel protein coding ENST00000533149 551 234 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000533149 617 264 UTR3 Trans
TCONS_00195828 LRP2 binding protein novel protein coding ENST00000533149 608 256 UTR5 Trans
TCONS_00199319 sorting nexin 24 novel noncoding ENST00000533149 628 267 noncoding Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000533149 615 263 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000533149 615 263 UTR5 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000533149 663 265 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000533149 663 265 UTR3 Trans
TCONS_00211226 antisense novel protein coding ENST00000533149 615 263 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000533149 612 269 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000533149 603 265 noncoding Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000533149 564 233 UTR3 Trans

Sequence

>TCONS_00240685 (1339 nt)
GAAAAACGCAACCGATCCAGATCTAGATTTTAGGTAATAACGGCAGTGGTGTCATCTTTTTTTGCTGGGTGGGGAGGGGCCGCGGAGTTACCCAGGCTGG
AGCGCAGTGGCGGGATCTCGGCTCACTGCAGCCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGTG
CCACCACGACCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCT
CGGCTTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCGCGCCCGGCCGAGGTGTCATCTTACTTAAAGTCAACTTCTCTTCTCTGAGCCTTAGTTTCT
TCATATTTAAAGAAAGCCAGTTTAACTAAATGACCTTTAAACTTTTTCTGCTCTCAATTGTGATATCAGATGTGCCGGCCTTTGCTTAAACACAAGCTTA
GTAAGCGTGGCACATATTCCTAGAGTATTCATTTTACCCAAAGTTTTAGATGTAAAATGTCTTGTAACAAAGTATGAATGTAAAATATTCACAGAATTCA
AATGAACTTAGAAATTTTGACACTACTGCCAGTCAGTTCACACTACTTCTCCTGACTGTCCCAGGCTGTAATGTGAACTCCTCAGCAAATAGGGACACTT
CAGTGGAAGTTTGAGAAGCACTCCTTCCTTAGAGCAACTTTGCCTCCTTTGCATATAGGCTCTTTGCCATCGGCTCCCAGCTGTCTCCTGAACAGGGAAG
CTCAGGCATTGAGATGCTGGAGACAGACACATTCAAATTGCACTGCTACCAGACACTGACAGGGATCAAGTTTGTGGTTCTAGCAGATCCTAGGCAAGCT
GGAATAGATTCTCTTCTCCGAAAGATTTATGAGATTTACTCAGACTTTGCCCTCAAGAATCCATTCTATTCCTTAGAAATGCCTATCAGGTGTGAGCTCT
TTGACCAGAACCTGAAGCTAGCTCTGGAGGTGGCAGAGAAGGCTGGAACTTTTGGACCTGGGTCATAGGCTGAACCTGTTATGGACCCCCAAATTCTGAG
AGTTCCTGCAACAAGAATACTGCTGTTGACACTCCAGTGGAAATCCCAGCAGCCTTGTTAGTGCACTTGAAAGTGGGAGAATGCTGACCCTGATGACTTG
TACTGATTCCTGAGCCTTAACACTGTGCTCTTTCCTTCTGTATATACCATGGTCTTACTTTCCAACTCTGTACAGATTTATTTATGGAGGAGCTAGGTCC
ATAAATGTTGTAATAAATATTCCTTTGATCTTGGTGTTTG

Expression



Full and truncated open reading frames discovered in TCONS_00240685

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.