Detailed information on ENST00000538120

lncRNA-RNA interactions

Number of interactions: 44

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000538120 601 270 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000538120 554 279 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000538120 604 281 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000538120 605 291 UTR3 Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000538120 520 290 UTR5 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000538120 520 290 UTR5 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000538120 555 292 CDS Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000538120 590 291 CDS Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000538120 556 270 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000538120 551 291 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000538120 603 290 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000538120 603 290 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000538120 603 290 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000538120 614 290 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000538120 601 270 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000538120 601 270 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000538120 601 270 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000538120 605 291 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000538120 605 291 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000538120 605 291 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000538120 613 293 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000538120 673 267 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000538120 673 267 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000538120 562 299 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000538120 636 282 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000538120 620 270 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000538120 613 281 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000538120 545 256 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000538120 600 265 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000538120 600 265 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000538120 609 270 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000538120 609 270 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000538120 609 270 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000538120 600 286 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000538120 644 281 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000538120 609 273 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000538120 609 273 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000538120 607 281 UTR5 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000538120 555 292 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000538120 631 282 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000538120 601 270 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000538120 612 290 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000538120 605 290 CDS_UTR Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000538120 604 281 UTR3 Trans

Sequence

>TCONS_00249683 (2471 nt)
GACCACTCACTGGTGACTGTGGTAATGTAGTGTCTTAGGTCATATGGCCTGTGGCCTAGCCTAGGAAACTTTTCTCCAGTTTTGTTTTTCCTAAAGTATT
TTTGTCATTTTCCTCTCGTGTTTCACACTGCATGTCATTTAAAAAACTTTTTATTTTAAAATAATTTTAGATTTCCAGAAGAGTTGCAAAAGTAGTGCAT
CCAGTTCTCACAGACCTTCCCCCAGAGGCCCCTAATTGAACATCCTACACAGCCCCGGCACACTCATCAAAACTGAGAAACTCCCATGAGCAGCATACTC
TCAGCTGAAACAAGGGACTTCATTCAGATTTCACCAGTTTGCTCACTAATGTCCTTTTGTGTTACAGCATCCAAACTAGGATCCCGCCTTGCAGTTAGTT
GTCATATCTCCTTCGTCTTCTCTATATGTGACAGTTTCTCAGCCTTTTCTTGTATTTAATGACCTTGGCATTTTGAAATGCATGTAGTTTTTATAACAAA
ACTTTCAGTATGGCCGGCTCACGCCTGTAATCCCAGCACTTTGTGAGGCTGAGGTGGGCGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGTGACC
AACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAA
TCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCAGAGATCGCACCACTGGACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCAAAAAAAAAAATAAA
AAAAACACACAACTTTAAATAGGTACACATATGTAAACACATGCTAGCCTGCTCTTTGGGCTGTTTTCACTGTGTCCTGCGTTCCTCCCTGTTCCTCCTT
CGTCTTTCCCTTTCTCTTCTCACTCCCACAACCCTCTCATTAAAGGCCTCATCCCCGCCCTCTGCTGATAACCAAGTGCTGAGTCAGGCCGAGAACATAA
ACCAGGCGCTCTGAATTTCTCCTTCCAGGCTCCCCATGCTTTCATTCTGCACCTGAGAAAACCATTTTAACATTTTCTGTTCTAGCCTTTATGTAATTAC
CATTAATTTCTATGAGCTAATTTAATGTCCTCTTCAGAGTCTATGGCTGGAAAGTAATAATCCTTCAGTTTGAGTAATAATAATAATCTTTACTACTGTT
TTGGCCCATAACATCTTAAACACCCATTCTTGGAACTTGCTACAAAAGTTACTGAAATTAGTGAGAACCAATTGATATTTCCAGCATAAAGCTGCTCTGC
ATGACATCTGTATAACTGCTTTGCATGTGTGTATTTTAATTGTCGTTATTGCTTGGTAATAATTTATTCAAGAATTAACAAACTTCAACTTGGGGTTAGA
TTTTAGTAGAATATTGGGGAGGGTGCAACCGTTTTTTTTTTTTTTAATTCTACCTCTTCCAAATTTATTAACTTGTTTCTTTAAGTTCAAATGGATACAA
TCACATGCAGACTCTGGCATGTCTATGCATAGGTAAACTTTTTCTCCCCTCACAGTAAGTAAAATTTCAAGTAAAATTTTGTGAGCATAATGGCCTTAAC
TCCCTATAAAACTTCCCTGTTATATTTTTTTTTTTACATTAACTAACATTAATTATGTGTTTGTTCTAGAACAGTTGTACACTGACCAGTCTTTCGGTTG
ATTTGTGGAACTTTTAACTCTTTGGTCTTTTAGAGAATCCAAGTTCATAAAAGACGCAGATGAAGAGAAAGCTTCCTTGCAGAAATCCATCAGTATAACT
AGTGCCTTACTCACAGAAAAGGATGCCGAGCTGGAGAAACTGAGAAATGAGGTCACAGTGCTCAGGGGAGAAAACGCCTCTGCCAAGTCCTTGCATTCAG
TTGTTCAGACTCTAGAGTCTGATAAGGTGAAGCTCGAGCTCAAGGTAAAGAACTTGGAGCTTCAACTCAAAGAAAACAAGAGGCAGCTCAGCAGCTCCTC
AGGTAATACAGACACTCAGGCAGACGAGGATGAAAGAGCCCAGGAGAGTCAGATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAA
GACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAGTGATGATCAGGAGAAACAGTCCA
AGAAGAAACCTCGCCTCTTCTGTGACATTTGTGACTGCTTTGATCTCCACGACACAGAGGATTGTCCTACCCAGGCACAGATGTCAGAGGACCCTCCCCA
TTCCACACACCATGGCAGTCGGGGTGAGGAACGCCCATACTGTGAAATCTGTGAGATGTTTGGACACTGGGCCACCAACTGCAATGACGACGAAACCTTC
TGATGAAGCCTCCAGTGGAGAACTGGGCTTGCTCAGACGCACTCGCATTGACACAACGTAACACCAGCATTG

Expression



Full and truncated open reading frames discovered in TCONS_00249683

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.