Detailed information on ENST00000538669

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000538669 611 457 UTR3 Trans
TCONS_00231454 transcribed_unprocessed_pseudogene novel protein coding ENST00000538669 509 353 UTR3 Trans

Sequence

>TCONS_00231454 (3508 nt)
GATATGCAACAGAAGTTGAATAAAAGGAGAGACTCTGTTTCTGAATGGAAAATTAATAAATGTTAATTTCATGGACCAGTTTCATGGAAGATAATTTTTC
CATGGACTGGAGGTGGAGGGGGATGGTTTCAGGATGATTCAAGTGCATTACATTTACTTAGTTAAAATATAAATTTGACACATTTCCATTAGTGTCCCAA
AAGGTACTTTTCTACTGTACTTGACAGTTGATACTGTAGTTCATCTGGAAGAATAAATGAGAAAGTAGTAAAATATAAACAAATTACAGTAATACAAGGG
CTTGTTTTTATCAAATATTAAAATGGACCGTGAAGCCATAGGCCAGCATAGTTTTGGCAGAGAAGAGCAAGATCAGAGAAGAACGGAGAATCCACAGATA
GGTCCAAGTATGTATGTTGGCTTACTATGTGACAAAAATGGTAATTCAAACCATGGAAAACACATTTAGTCGTTTATTTATTTTTAGAATTGTGTTTATC
CATTTATTTAATAAATAGATAATAGAACTTAAATAAATAGAGTATTTGAAACAAAACAAAACCATTCTCCCATGTTACAGTAGACTTACTCCCTGATAGA
CAATGGAGAAGGAAGGGTGAGGGGTGGATGACAGGAAATTACTGAATAGGCACAGTGTACATTATTTGGGTGATGGATACCCTAAGTGCCCTGACTTCAC
CACTATGCAATCCTATGTATGTAATGAAATTGCACTTGTGCCTCACAAATTTATACAAATTATAAACAACAACAACAACAATAGACTATTCCCTAAAAGA
GCTGTGCCCCAGACCATCCACTAGGTCAGCAGTCCCCAGCCTTTTTGACATCAGGGACTGGTTTCATGGAAGATAATTTTTCCATGGACTGGAGGTGAAG
GGGGATGGTTTCAGGATGATTGAAGCACATTACATTTACTGTGCACTTTTTTTCTATTATTATTACATTGCAATATATAATGAAATAATTACACAGCTCA
CCATAATGTAAAGTCAGTGGGAGCCCTGAGCTTGTTTTCCTGCAACTAGATGGTCCCATCTGGGGGTGATGATCAACAGATCATTGGGCATTAGATTCTC
AGGAGCACACAACCTAGATCCCTCACATGTGCAGTTCCCAATAGGGTTCTGCTCCTATGAGAGTTGAATGCCACAGCTGACCTGACAGGAGGCGGAGCTC
AGGCTGTAATGCAAGTGTTGTGGGGTGGCTGTAAATACAGATGAAGCTTCGCTCGCCTGCTCACCTCCTGCTGTGCAACTTGGTTCCTAATCTACTGGTA
CCCATCCATGGCCCAGGGGTTGGGAAGCCCTGCACTAGGTGAACGTACGTAAATGATTTGGTTTATGTATGCGTTACCCCTTGTAAGAGCAACGTGTGAA
GCCCATGGTGGTGGGGTGGAAGAGTGGGAATTGGATGGAAAATCATCTAGACTTTTTTCTTTTTGGAGTTCTGCTTTTATCTAATATTTCTATTCAGCAG
TCAGTTCAGAAAGATACTCAGTAGAAAGATACTCATGCTGAAGGATTGAAATTGGCTCTGACTTTCTAAATTTCACATACAGGTCCATTGTTCTGTTGAG
CACAAGAGGAGAAATAAAGCAGTTAAACATTTCACACTTACTAGTACCTCTGGGATTAGCCAAACCAGCTCATCTTTATGACAAAGGGAGTACCATATTT
TTGGGATTCAGTGGAAACTTTAAACCATCATGGACTAAGCTATTTACCAGTCCTGCTGGACAGGGCCTTGGGGTGCTTGAACAATTCATACCTTTGCAGC
TGGACGAATATGGTTGTCCCAGAGCCACCACTGTCCGCAGAAGAGACCTGGAACTGCTAAAGCAAGCTTCAAAAGCACATTAGAGACTAACTGTAACTTA
AGTGCTGGGGGAAAAAAAATGTGAACTAACTTATTTAATTTATGGCATTTTAAAATGACACTGTTAACCCAACGGAACCATTTTCCAGTTTGATACAGAA
TGGGGAGAAAAGAAAGCGTTTGAAATTATTGCTTGGATACCAGCTTCATGCACCTTCTAGTTGTACAAAATGTTAAAGACGTTGTTTGTATTTGTAAGGC
TGGTGTATTCAGAGAGCAGATCTCTTATTCCTCACTTTCCACCCCCGTATTTTGTAATGACCATGAGCAATGTTTTTACTTTTTGTATAATGGGGTGGGG
TGGAGTGGGGGCTTCTGAGAGTCAGCCTGAGGTCTTTAGAGGACCAGCTATTGTAGCACCTTGGATACTTGAAGTTTAATGCTCAGTTGGGTCGGGTGGC
AGTTGACTTGGTGGCTGGCATGTTCAGCAGTGCCTGGGGCCCTGTTTCTGGGCAGCCTTTGAGGATTTTCTATGATATTGAATGACAGTTTTAAGTGGCA
ACTCAGGCCCAGCTCATGCCCTTTTTTGCCTGGACATGTGCTATTTTTATTCACTTATATATCAATTACTTGTAAGGGTTAAACTTTCAAACAGGAAGTA
TATTGGGACAAAAGGGCTCTTGGGGATTAGATATCCCTTTAATCTGTGACCATTGGGCAAAAAATTTTCCTGCAGCAAAAGTCTGAGGCTGTTGGGACCA
TTTTTGCAGCTTTAATCCTTAGCCTCTTTTGACTGTATATTTGTGTTTAAAATGCAGAGCTCAACTGAATATTTCCTTTTTTGTTTTGTTTTGTTTTGTT
TTAAGAAGTAGGTTGTTTTCCTGAACCGTAAACTTGTATCATTTTAACTTGCACAAAGGAAGTCTGTTCTTGGTATTGCTCTTGCACTTGGGTTTTTTGT
TATTGTTTTGTGTGGATTTTTTAAAGCTTTTCTGTTCACCCTCCTGCCAGGAAAATCCCAGAAAGCTTAATGATACCCCAAAATGATTACACCCAGGGAG
GAAAAAAAGGAGCGCTTTCTAGGGTCAGAATCGTGGAGAGAATACTCAGAAATGAACCTCTTTAAAGCCTTGCAGGAATGAGTCACTCTTACTTAATGAA
ATGTTAAAGCCAATTAAAAAGCATGCTGTGATGCCCAGCTTCCCTTTCCACAGGGTGCATGCGTCTCCTGCTGGTGAATCACATGCGGCAAGAGGCAACT
GGCTCCACAGCCTGGGATGCTGCCGTACCAAGAGGAAAGAAGCAGCAAAATGCCTTTACGTTGTTCTAAACCCCCGACGCATAAAGTGTAGAGGAGGGAT
GGCCAAGGGTGGGTGGTAGAAAGTGTGTTCAGGCTGACACTGGCAATGAGTACAGATAATTTCACTTTCCTCTTCTAGGGGCAAAGGCTGATGGCCTCTA
CCTTTGTATCCAGGAGAAACTGCAGAGCAGCCCTGTGACTTTACAAAATATGCTACCTCAAAGTGCTACCGATAAACCTTTCTAATTGTAAGTGCCCTTA
CTAAGGGCACATGTCTTAATCAAAGTTAGTTTTTTGTTTTCTGGTTTGTTTTTTTTTTTTGTATATTGATGAATGAGATCTTACCTATTAAATATATTAT
TGGATTATG

Expression



Full and truncated open reading frames discovered in TCONS_00231454

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.