| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000264914 | arylsulfatase B | protein coding | ENST00000542524 | 512 | 302 | UTR3 | Trans | |
| ENST00000375140 | coiled-coil domain containing 153 | retained intron | ENST00000542524 | 533 | 281 | noncoding | Trans | |
| ENST00000415318 | coiled-coil domain containing 153 | protein coding | ENST00000542524 | 533 | 281 | UTR5 | Trans | |
| ENST00000521027 | pleckstrin and Sec7 domain containing 3 | protein coding | ENST00000542524 | 552 | 311 | CDS_UTR | Trans | |
| TCONS_00075339 | latent transforming growth factor beta binding protein 2 | novel protein coding | ENST00000542524 | 504 | 312 | UTR3 | Trans | |
| TCONS_00189916 | doublecortin-like kinase 2 | novel protein coding | ENST00000542524 | 520 | 299 | UTR3 | Trans | |
| TCONS_00189917 | doublecortin-like kinase 2 | novel protein coding | ENST00000542524 | 520 | 299 | UTR3 | Trans | |
| TCONS_00189925 | doublecortin-like kinase 2 | novel protein coding | ENST00000542524 | 520 | 299 | UTR3 | Trans |
>TCONS_00189925 (834 nt)
ATGCAGAAAAATATCCTTGTGGATTATGGACTCCGACGAATCACATTCTTGATTGCCCAAGAGAAAGAATTTCCCAAGTTTTTCACATTCAGAGCAAGAG
ATGAGGTATGGCCAAAAGTAATGATGTTTTCTCTTCTCTAGCATCTTGTTTTATTTTTTAAGAGATGGGATGGGGCCGGGTGTGGTGGCTCAAGCCCGTA
ATCCTAGCACTTTGGGAGGCTGAGGCAGGAGGTTTGCTTGAGCTCAGGAGTTCTAGACCAGCCTGGGTTATATAGTGAGACCCTGTCTCTACAAAAAAAT
TAAAAAATCAGCCTGGCATTGTGATGCAAGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAACCTGGGAAATAGAGGTTTCAGT
GAGCCAAGGTGATTCCACTGCACTCTAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAGGAAAAAAAAGAGATGGGGTCTCACTATGTTGCCCA
GGCTGGACTCGAACTTATGGCTCAAGCGATTCTCTTGCTTCAGCCTCCCGAATAGCTGGGACTATAGGCACATGCCACCGTGCCTCCCAGCTCCCTGGCA
TCTTTGATATTCATGAAGAATATAGTCTGCAGTCCTTAAGGCATCCCCATATTCAAGAATGTAGCAACTTTTGTGTAGACTGCAGTCTTCCTCTGGGATT
GTATTTCCATTGAGAGCCCTCTGTTCCCTGCATGGCACTCAGACCTGAGAATCTTGCCCTTTCAGCCTCACTACAGGTTTCTGTCTTGCTTGAATAATTT
TCAGTACTTGCTGATGTACTCAGTAAGACATTTTT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.